←Back to structures

NC_012530.1__YP_002790722.1__lb338_phage_43__00043

Bact-Vir

NC_012530.1__YP_002790722.1__lb338_phage_43__00043

Identity

Accession:
NC_012530 ↗
Kingdom:
phage

Quality

91.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Mooreparkvirus› Lactobacillus_phage_Lb338-1

TaxID: 2892342

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-96
PDB
Domain cluster: representative
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 33.0 3.87e-01 100.0% 70.3%
3npfB01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 36.0 4.15e-01 98.9% 98.5%
2ztbA03 2.60.40.3040 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 28.0 3.65e-01 81.3% 100.0%
5wtzA01 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.51 40.0 3.11e-01 86.8% 71.4%
4damC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 37.0 3.60e-01 76.9% 96.0%
1v1qA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 36.0 3.46e-01 75.8% 94.5%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3922679 4.1.1.154 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4772 0.63 32.0 4.23e-01 98.9% 90.0%
3270284 3529.1.1.1 ↗ beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Vault 0.63 38.0 4.58e-01 89.0% 93.3%
158175 372.1.1.1 ↗ a+b complex topology › RNase A-like › RNase A-like › RNase A-like › RnaseA 0.55 37.0 3.37e-01 82.4% 51.6%
3559265 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.52 40.0 3.46e-01 82.4% 99.3%
3491618 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 30.0 3.54e-01 78.0% 90.9%
4079197 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 29.0 3.04e-01 100.0% 58.8%
4238279 2.1.1.6 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.51 36.0 3.41e-01 75.8% 93.0%
3481729 4.11.1.2 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.50 37.0 3.47e-01 100.0% 60.8%