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NC_012530.1__YP_002790746.1__lb338_phage_67__00067

Bact-Vir

NC_012530.1__YP_002790746.1__lb338_phage_67__00067

Identity

Accession:
NC_012530 ↗
Kingdom:
phage

Quality

72.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-73
PDB
Domain cluster: representative
CATH (57)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4f88102 3.90.1720.60 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.70 60.0 4.16e-01 98.5% 29.6%
4x9cD00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.65 45.0 4.64e-01 89.4% 78.3%
1ts9A00 2.30.30.210 Mainly Beta › Roll › SH3 type barrels. › Ribonuclease P/MRP, subunit p29 0.65 46.0 4.07e-01 100.0% 51.0%
4cbvA02 2.40.50.1020 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › LytTr DNA-binding domain 0.64 53.0 4.43e-01 93.9% 80.5%
2cudA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 49.0 4.67e-01 97.0% 72.2%
7afrX02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.62 44.0 4.56e-01 93.9% 83.3%
1lckA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 48.0 5.07e-01 100.0% 96.6%
4k17B01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 46.0 3.96e-01 83.3% 75.7%
1tj6A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 46.0 3.92e-01 83.3% 92.2%
1x6bA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 49.0 4.99e-01 100.0% 92.2%
4g54A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.61 46.0 3.80e-01 100.0% 44.0%
1w1hD00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 47.0 3.79e-01 86.4% 83.2%
1kq1H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.61 43.0 4.39e-01 89.4% 75.8%
4hhvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 47.0 4.06e-01 84.8% 88.3%
2x4jA01 2.30.30.600 Mainly Beta › Roll › SH3 type barrels. › 0.60 41.0 3.68e-01 92.4% 48.0%
6o1wA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.60 40.0 2.75e-01 71.2% 92.2%
1rwzA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.59 48.0 3.24e-01 87.9% 94.7%
3kd9A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.59 49.0 3.73e-01 95.5% 53.3%
3goxA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 41.0 4.44e-01 90.9% 98.0%
3e1sA04 2.30.30.940 Mainly Beta › Roll › SH3 type barrels. › 0.58 43.0 4.32e-01 90.9% 78.3%
2rqrA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 46.0 3.87e-01 100.0% 49.6%
8f5dA05 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.58 42.0 2.99e-01 78.8% 81.9%
4bs9A01 3.90.930.60 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.58 37.0 3.32e-01 86.4% 44.2%
5w7zA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.57 42.0 3.60e-01 80.3% 99.1%
2arzA02 3.20.180.10 Alpha Beta › Alpha-Beta Barrel › Split barrel-like › PNP-oxidase-like 0.57 45.0 4.14e-01 87.9% 78.4%
2gzaA01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.57 45.0 3.87e-01 87.9% 84.3%
2pqhB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 43.0 4.40e-01 93.9% 86.2%
5kmpB00 3.50.50.100 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › 0.57 46.0 2.88e-01 92.4% 37.2%
2ekhA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 43.0 4.13e-01 92.4% 71.2%
4chjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 45.0 3.72e-01 89.4% 57.3%
3t0pA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.56 43.0 3.26e-01 84.8% 67.4%
2cs7A00 3.10.50.90 Alpha Beta › Roll › Chitinase A; domain 3 › 0.56 42.0 4.44e-01 90.9% 98.2%
7u32F02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.56 40.0 4.48e-01 84.8% 100.0%
4iimA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 42.0 4.46e-01 92.4% 98.2%
2d9xA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 42.0 3.67e-01 84.8% 83.6%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 38.0 3.87e-01 89.4% 73.4%
3oc4B01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 47.0 3.47e-01 97.0% 62.1%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 37.0 4.07e-01 87.9% 100.0%
4c5eC02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 48.0 4.30e-01 100.0% 77.1%
1sxjH02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.55 38.0 3.22e-01 75.8% 92.2%
4govA01 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.55 46.0 3.75e-01 97.0% 95.4%
5i4eA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.54 35.0 3.83e-01 81.8% 91.3%
1dmlA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.54 42.0 2.89e-01 86.4% 35.2%
6bogA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 37.0 3.96e-01 89.4% 92.3%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.54 37.0 3.93e-01 90.9% 92.3%
4omfB02 3.10.450.750 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 36.0 4.06e-01 71.2% 100.0%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 36.0 3.59e-01 90.9% 65.8%
1awoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 40.0 4.22e-01 93.9% 98.2%
2krsA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 43.0 4.42e-01 92.4% 100.0%
3nmzD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 44.0 4.11e-01 93.9% 75.0%
1vjvA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.53 44.0 2.88e-01 100.0% 20.8%
3dnhA02 3.20.180.10 Alpha Beta › Alpha-Beta Barrel › Split barrel-like › PNP-oxidase-like 0.52 40.0 3.83e-01 89.4% 80.7%
3htyA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.52 36.0 3.28e-01 74.2% 100.0%
2nykA01 3.30.500.30 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › 0.52 44.0 3.50e-01 100.0% 91.2%
3h41A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 42.0 4.21e-01 100.0% 95.6%
4qrlA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.51 40.0 3.54e-01 93.9% 95.5%
2vgeA00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.51 39.0 2.78e-01 84.8% 30.0%
ECOD (81)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4990212 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 49.0 5.33e-01 98.5% 87.3%
4992872 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 46.0 4.99e-01 97.0% 85.5%
4505797 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.65 49.0 4.95e-01 100.0% 81.5%
3576021 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.63 49.0 3.96e-01 84.8% 69.2%
4943876 4.7.1.0 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 0.63 45.0 4.06e-01 95.5% 53.7%
4163851 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.63 43.0 4.52e-01 90.9% 80.0%
5044072 2.1.1.83 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SfsA_N 0.62 41.0 3.95e-01 80.3% 58.7%
5033242 4.7.1.1 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 0.62 45.0 4.20e-01 92.4% 61.2%
4182977 4.1.1.297 beta barrels › SH3 › SH3 › SH3 › YajC 0.62 39.0 4.12e-01 89.4% 70.0%
5011550 4.7.1.1 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 0.62 41.0 4.11e-01 84.8% 66.7%
4367301 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 45.0 4.80e-01 93.9% 94.5%
3271442 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.62 47.0 3.64e-01 83.3% 62.7%
4550511 4.1.1.175 beta barrels › SH3 › SH3 › SH3 › MSSS 0.61 37.0 4.24e-01 81.8% 88.9%
4526160 4.1.1.175 beta barrels › SH3 › SH3 › SH3 › MSSS 0.61 38.0 4.55e-01 74.2% 100.0%
4985969 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 43.0 4.46e-01 89.4% 81.7%
4959077 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 50.0 5.14e-01 92.4% 100.0%
3290127 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.61 44.0 3.04e-01 75.8% 79.0%
4584943 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.60 43.0 4.32e-01 90.9% 74.3%
4939065 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.60 46.0 3.87e-01 84.8% 97.5%
139950 4.1.1.126 beta barrels › SH3 › SH3 › SH3 › DUF5608 0.60 42.0 4.39e-01 90.9% 85.7%
4031578 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 39.0 4.27e-01 90.9% 86.0%
4974211 4.1.1.485 beta barrels › SH3 › SH3 › SH3 › DUF6897 0.60 43.0 4.46e-01 89.4% 83.3%
4210485 4.1.1.303 beta barrels › SH3 › SH3 › SH3 › SH3_retrovirus 0.60 45.0 4.62e-01 98.5% 83.1%
4280256 4.1.1.175 beta barrels › SH3 › SH3 › SH3 › MSSS 0.60 39.0 4.26e-01 89.4% 88.0%
3782293 4.1.1.170 beta barrels › SH3 › SH3 › SH3 › Rad9_Rad53_bind 0.60 39.0 4.15e-01 89.4% 80.0%
5034040 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 42.0 4.54e-01 90.9% 89.1%
3523046 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.59 46.0 4.22e-01 97.0% 64.7%
2575643 4.1.1.8 beta barrels › SH3 › SH3 › SH3 › IN_DBD_C 0.59 42.0 4.20e-01 92.4% 72.5%
3903323 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.59 46.0 4.42e-01 100.0% 74.7%
3931418 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 46.0 4.78e-01 98.5% 95.0%
4031435 4.1.1.143 beta barrels › SH3 › SH3 › SH3 › TagH_SH3-like 0.59 47.0 4.77e-01 95.5% 90.8%
4315973 227.1.1.3 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.59 45.0 3.72e-01 84.8% 97.6%
4941512 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 42.0 4.14e-01 93.9% 71.4%
4001872 220.1.1.123 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_SSH1-like_1st 0.59 45.0 3.34e-01 84.8% 56.2%
4945344 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 42.0 2.75e-01 90.9% 15.7%
4996160 2003.1.3.10 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › FAD_oxidored 0.59 47.0 3.16e-01 87.9% 35.7%
5054597 4.1.1.40 beta barrels › SH3 › SH3 › SH3 › FeoA 0.58 46.0 4.50e-01 90.9% 84.0%
3933788 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 44.0 4.59e-01 90.9% 90.0%
5012053 4.1.1.40 beta barrels › SH3 › SH3 › SH3 › FeoA 0.58 46.0 4.52e-01 90.9% 87.8%
4359892 4.1.1.96 beta barrels › SH3 › SH3 › SH3 › Hfq 0.58 45.0 4.23e-01 92.4% 68.8%
4151014 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.58 40.0 4.20e-01 93.9% 81.7%
3590315 4.1.1.40 beta barrels › SH3 › SH3 › SH3 › FeoA 0.58 46.0 4.47e-01 90.9% 85.3%
5004476 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 41.0 4.19e-01 90.9% 76.9%
3929784 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 41.0 4.48e-01 89.4% 100.0%
4660084 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.58 41.0 4.14e-01 92.4% 75.4%
4527355 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.58 42.0 4.20e-01 92.4% 76.8%
4302032 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.58 41.0 4.20e-01 90.9% 80.0%
147060 3270.1.1.1 a+b two layers › a+b domain in heme oxygenase › a+b domain in heme oxygenase › a+b domain in heme oxygenase › DUF2470 0.58 44.0 4.14e-01 87.9% 79.3%
4342488 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 39.0 4.00e-01 90.9% 74.6%
4056584 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.57 45.0 4.30e-01 100.0% 73.8%
4429329 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.57 41.0 4.21e-01 90.9% 80.0%
4940673 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.57 42.0 4.34e-01 90.9% 86.7%
4963446 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.57 41.0 4.13e-01 90.9% 78.5%
4226934 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.57 41.0 4.16e-01 90.9% 80.0%
4299932 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.57 41.0 4.20e-01 92.4% 81.5%
4602101 4.1.1.58 beta barrels › SH3 › SH3 › SH3 › SH3_3 0.56 47.0 4.78e-01 100.0% 95.4%
3517651 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.56 42.0 4.13e-01 90.9% 74.7%
3259044 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.56 42.0 4.42e-01 90.9% 100.0%
4476045 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.56 41.0 4.10e-01 93.9% 77.1%
3998645 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.56 42.0 4.29e-01 92.4% 86.2%
3927363 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.56 37.0 4.09e-01 89.4% 92.0%
5045214 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.56 42.0 4.22e-01 89.4% 80.0%
3561462 148.1.3.384 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › SH3_2 0.55 43.0 3.24e-01 100.0% 33.5%
4118226 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.55 40.0 3.98e-01 90.9% 74.3%
3339169 4.1.1.415 beta barrels › SH3 › SH3 › SH3 › PNPOx_N 0.55 41.0 3.85e-01 92.4% 63.5%
3500448 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.55 42.0 4.26e-01 89.4% 84.6%
5046193 4.7.1.1 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 0.55 43.0 3.94e-01 87.9% 66.7%
4030603 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.55 42.0 4.20e-01 92.4% 82.4%
4446467 4.1.1.278 beta barrels › SH3 › SH3 › SH3 › SH3_YKFC_2nd 0.54 43.0 4.36e-01 100.0% 92.3%
3789092 60.1.1.3 beta barrels › SPOC domain-like › SPOC domain-related › SPOC domain › Sld7_N 0.54 38.0 3.11e-01 75.8% 61.5%
4947175 4.7.1.0 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 0.54 42.0 3.92e-01 89.4% 65.6%
3601402 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.54 39.0 2.51e-01 77.3% 72.5%
5039349 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.53 41.0 4.30e-01 89.4% 100.0%
4650162 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.53 42.0 4.30e-01 90.9% 95.4%
4627519 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.53 33.0 4.00e-01 81.8% 100.0%
3713613 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.52 41.0 4.18e-01 92.4% 92.3%
3501560 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.52 43.0 4.04e-01 100.0% 74.4%
3996278 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.52 41.0 3.46e-01 89.4% 60.0%
1281147 9.23.1.1 beta barrels › Lipocalins/Streptavidin › Hypothetical protein BT_0869 › Hypothetical protein BT_0869 › Lipocalin_3 0.52 36.0 3.24e-01 74.2% 51.1%
5038850 4.7.1.1 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 0.52 43.0 3.94e-01 95.5% 75.6%
1545880 4.1.1.278 beta barrels › SH3 › SH3 › SH3 › SH3_YKFC_2nd 0.50 42.0 4.01e-01 100.0% 81.2%