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NC_012530.1__YP_002790783.1__lb338_phage_104__00104

Bact-Vir

NC_012530.1__YP_002790783.1__lb338_phage_104__00104

Identity

Accession:
NC_012530 ↗
Kingdom:
phage

Quality

53.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Mooreparkvirus› Lactobacillus_phage_Lb338-1

TaxID: 2892342

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 164-254
PDB
Domain cluster: rep: OP753453.1__WAB24442.1__X__00067__D80-189
CATH (38)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ae0X01 2.40.40.10 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain 0.80 75.0 5.82e-01 100.0% 61.7%
3sumB00 2.40.40.10 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain 0.78 71.0 6.08e-01 96.7% 87.5%
3czbA01 2.40.40.10 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain 0.77 72.0 5.72e-01 100.0% 58.8%
4jcwA01 2.40.40.10 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain 0.77 71.0 6.73e-01 98.9% 97.1%
1qcsA01 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.76 63.0 6.67e-01 98.9% 98.8%
3d30A01 2.40.40.10 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain 0.75 70.0 6.57e-01 100.0% 94.4%
3m3gA00 2.40.40.10 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain 0.74 65.0 5.91e-01 94.5% 93.3%
2kqaA00 2.40.40.10 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain 0.74 65.0 5.87e-01 94.5% 90.8%
3hu1A01 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.71 60.0 5.88e-01 97.8% 85.4%
1cz4A01 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.71 61.0 6.17e-01 100.0% 93.5%
2vpzA05 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.68 59.0 4.95e-01 96.7% 79.9%
1o5uA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.64 36.0 3.73e-01 100.0% 56.8%
1vw3C01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.61 53.0 4.75e-01 100.0% 67.9%
3es1A02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.61 35.0 3.15e-01 100.0% 40.5%
6m3aA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 36.0 4.08e-01 89.0% 80.3%
5fljA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.60 35.0 2.80e-01 100.0% 28.6%
1u1sA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.59 37.0 4.22e-01 94.5% 86.4%
5ja1B00 3.90.820.10 Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id 0.59 28.0 3.22e-01 79.1% 59.1%
2i45D00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.58 34.0 3.35e-01 100.0% 52.5%
3fppA01 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.57 50.0 4.87e-01 100.0% 87.5%
4h8wC02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 37.0 3.98e-01 94.5% 81.3%
2waaA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.56 39.0 3.53e-01 100.0% 53.7%
1m5q101 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.55 38.0 4.25e-01 94.5% 94.1%
2f4nB02 2.40.30.90 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacterial fluorinating enzyme like 0.55 47.0 4.68e-01 94.5% 96.8%
2d93A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 34.0 3.00e-01 100.0% 41.8%
2q30A01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.54 33.0 3.36e-01 100.0% 61.4%
4jx0A02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.54 43.0 3.74e-01 100.0% 55.2%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 35.0 3.91e-01 95.6% 87.0%
7ylrA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.53 45.0 4.38e-01 97.8% 98.1%
1i9gA01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.52 35.0 4.14e-01 100.0% 100.0%
3zm8A01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 40.0 3.65e-01 100.0% 60.6%
4kncA02 2.60.120.1380 Mainly Beta › Sandwich › Jelly Rolls › C-terminal carbohydrate-binding module 0.52 42.0 3.87e-01 100.0% 68.4%
1c1yB00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.52 37.0 3.95e-01 97.8% 90.9%
3ffjA04 2.60.40.4040 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 32.0 2.96e-01 100.0% 44.9%
1we6A00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.51 36.0 3.44e-01 98.9% 61.3%
3bcwA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 38.0 3.62e-01 100.0% 68.3%
2yn5A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 35.0 3.71e-01 100.0% 83.5%
3p42A03 3.10.560.10 Alpha Beta › Roll › Outer membrane lipoprotein wza fold like › Outer membrane lipoprotein wza domain like 0.50 35.0 3.85e-01 100.0% 90.5%
ECOD (58)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4927749 1.1.2.13 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › 3D 0.76 67.0 6.62e-01 93.4% 100.0%
3312403 1.1.2.24 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › KWL1 0.76 70.0 6.26e-01 100.0% 88.0%
1568967 1.1.2.24 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › KWL1 0.75 69.0 5.45e-01 100.0% 64.5%
3010131 1.1.2.9 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › DPBB_1 0.74 69.0 6.48e-01 98.9% 93.5%
3187650 1.1.2.9 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › DPBB_1 0.73 68.0 6.22e-01 100.0% 96.5%
3740397 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.73 64.0 6.30e-01 94.5% 97.9%
4977163 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.72 60.0 6.16e-01 100.0% 94.3%
3783660 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.71 62.0 6.07e-01 96.7% 87.0%
3933010 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.71 64.0 6.08e-01 100.0% 84.8%
4607187 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.71 61.0 6.04e-01 98.9% 89.5%
5032396 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.70 64.0 6.24e-01 100.0% 92.0%
3477728 1.1.2.19 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › IML1_N 0.70 64.0 6.30e-01 100.0% 94.7%
4670243 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.70 64.0 6.22e-01 100.0% 95.0%
4970084 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.70 60.0 6.22e-01 96.7% 100.0%
5042283 208.1.1.56 ↗ beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › MazE_antitoxin 0.69 63.0 4.33e-01 100.0% 31.1%
5012950 1.1.2.16 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › MacB_PCD 0.69 56.0 5.64e-01 84.6% 92.2%
3557903 1.1.2.19 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › IML1_N 0.69 62.0 6.14e-01 100.0% 93.7%
4992397 1.1.2.16 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › MacB_PCD 0.68 56.0 5.33e-01 87.9% 91.4%
4200338 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.68 61.0 5.84e-01 97.8% 93.3%
4890564 101.1.2.869 ↗ alpha arrays › HTH › HTH › winged helix domain › IML1_N 0.68 56.0 5.84e-01 98.9% 100.0%
4280405 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.68 58.0 5.92e-01 97.8% 95.6%
4958644 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.67 58.0 5.77e-01 94.5% 100.0%
3970673 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.67 39.0 4.54e-01 94.5% 81.5%
4013442 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.67 57.0 5.85e-01 97.8% 98.8%
3071125 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.67 60.0 5.57e-01 100.0% 86.1%
3284381 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.67 54.0 5.30e-01 89.0% 96.0%
3974016 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.66 55.0 4.81e-01 90.1% 72.6%
3596623 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.66 57.0 5.81e-01 94.5% 97.8%
4946372 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.66 56.0 5.25e-01 92.3% 90.9%
3223111 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.65 36.0 3.51e-01 91.2% 49.0%
4082437 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.64 38.0 4.72e-01 91.2% 98.2%
4890345 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.63 48.0 4.94e-01 100.0% 88.2%
3725555 10.12.1.39 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.62 36.0 2.79e-01 100.0% 26.8%
3193939 10.12.1.39 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.62 36.0 2.95e-01 100.0% 31.9%
4933556 10.12.1.39 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.62 36.0 3.36e-01 100.0% 47.3%
5049153 10.12.1.39 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.61 35.0 3.23e-01 100.0% 43.3%
381831 10.12.1.39 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.60 38.0 3.71e-01 100.0% 58.8%
3237442 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.60 54.0 5.24e-01 100.0% 97.0%
3626966 1.1.7.90 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ZNFX1 0.59 52.0 4.94e-01 100.0% 86.4%
3972951 1.1.7.88 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25963 0.59 43.0 4.67e-01 100.0% 94.7%
5050931 10.12.1.34 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › GPI 0.58 35.0 2.75e-01 100.0% 27.8%
3507639 4.1.1.219 ↗ beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.58 40.0 4.54e-01 96.7% 94.3%
4423739 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.57 49.0 4.86e-01 98.9% 91.6%
3702865 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.57 50.0 4.84e-01 100.0% 93.3%
5035941 1.1.4.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Bacterial fluorinating enzyme-C › SAM_HAT_C 0.57 51.0 4.98e-01 98.9% 92.0%
4941013 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 39.0 3.93e-01 96.7% 72.2%
5019286 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.56 40.0 3.89e-01 100.0% 68.0%
3224349 10.2.1.0 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.55 39.0 3.90e-01 100.0% 70.5%
3264263 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.55 39.0 3.26e-01 100.0% 39.4%
5082109 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.55 34.0 3.43e-01 90.1% 60.0%
4960934 11.1.4.23 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › CarboxypepD_reg 0.54 33.0 3.52e-01 91.2% 68.8%
3971321 4.1.1.28 ↗ beta barrels › SH3 › SH3 › SH3 › BPL_C 0.54 38.0 4.25e-01 96.7% 95.7%
3852545 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 33.0 3.81e-01 100.0% 93.3%
3932606 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.52 36.0 3.76e-01 97.8% 77.6%
3178077 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.52 38.0 4.03e-01 97.8% 91.3%
3563038 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.51 38.0 3.67e-01 100.0% 68.2%
4619601 10.32.1.48 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CBM_26 0.51 41.0 3.74e-01 100.0% 64.8%
5046269 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.50 42.0 3.34e-01 100.0% 46.1%