←Back to structures

NC_012530.1__YP_002790814.1__lb338_phage_135__00135

Bact-Vir

NC_012530.1__YP_002790814.1__lb338_phage_135__00135

Identity

Accession:
NC_012530 ↗
Kingdom:
phage

Quality

76.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Mooreparkvirus› Lactobacillus_phage_Lb338-1

TaxID: 2892342

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-78
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ethA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 43.0 3.43e-01 89.5% 29.8%
1fxkB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.67 45.0 3.92e-01 100.0% 47.7%
3nqoB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 46.0 3.51e-01 72.4% 78.0%
2gxgA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 45.0 3.71e-01 72.4% 66.4%
1ub9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 44.0 4.05e-01 72.4% 93.0%
4l3uA00 1.20.1480.40 Mainly Alpha › Up-down Bundle › hypothetical protein mp506/mpn330, domain 1 › Uncharacterised protein PF16133, DUF4844 0.63 34.0 2.85e-01 81.6% 31.7%
3bjaA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 43.0 3.56e-01 71.1% 66.2%
4esbA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 43.0 3.90e-01 71.1% 90.3%
2nyxB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 43.0 3.54e-01 72.4% 68.3%
4em2A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 43.0 3.42e-01 72.4% 62.7%
1wp1B01 1.20.1600.10 Mainly Alpha › Up-down Bundle › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.60 52.0 3.38e-01 98.7% 84.5%
2wpvE00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.58 42.0 2.88e-01 78.9% 32.1%
3mk7C01 6.10.280.130 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.56 40.0 3.76e-01 75.0% 94.7%
2oarB00 1.10.1200.120 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Large-conductance mechanosensitive channel, MscL; domain 1 0.53 42.0 3.65e-01 96.1% 54.4%
6wngA02 1.20.200.10 Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › Fumarase/aspartase (Central domain) 0.51 45.0 3.08e-01 97.4% 58.3%
1l8dA00 1.10.287.510 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.51 43.0 3.89e-01 96.1% 68.9%
4djbA00 3.30.70.2870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Mastadenovirus E4 ORF3 0.50 31.0 2.75e-01 76.3% 40.7%
ECOD (37)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3921728 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.68 43.0 3.66e-01 98.7% 42.6%
3236563 3567.1.1.0 ↗ a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer 0.67 43.0 3.55e-01 98.7% 39.2%
3550136 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.67 44.0 3.83e-01 100.0% 45.2%
3690513 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.67 45.0 3.71e-01 100.0% 39.8%
3485296 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.66 44.0 3.91e-01 100.0% 49.5%
3593339 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.66 44.0 3.79e-01 100.0% 45.2%
4062521 101.1.2.135 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.66 45.0 3.71e-01 71.1% 68.1%
370599 101.1.2.135 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.66 46.0 3.69e-01 72.4% 65.0%
3966164 101.1.2.15 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR 0.65 46.0 3.67e-01 72.4% 65.5%
4082847 101.1.2.15 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR 0.64 45.0 3.66e-01 72.4% 67.1%
3291221 101.1.2.135 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.64 45.0 3.63e-01 72.4% 70.7%
4957734 101.1.2.135 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.64 44.0 3.58e-01 72.4% 66.9%
5024808 101.1.2.15 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR 0.63 44.0 3.58e-01 72.4% 64.1%
4031251 101.1.2.231 ↗ alpha arrays › HTH › HTH › winged helix domain › Staph_reg_Sar_Rot 0.63 43.0 3.52e-01 71.1% 64.1%
1948716 101.1.2.231 ↗ alpha arrays › HTH › HTH › winged helix domain › Staph_reg_Sar_Rot 0.62 43.0 3.47e-01 71.1% 63.7%
3287147 4177.1.1.0 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.59 42.0 3.28e-01 80.3% 33.5%
3287925 101.1.2.15 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR 0.59 41.0 3.27e-01 72.4% 60.6%
4593130 601.7.1.40 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › Cas13a_C 0.58 54.0 3.46e-01 100.0% 31.5%
3937938 109.4.1.47 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › IBN_N,Xpo1,CRM1_C,CRM1_repeat,CRM1_repeat_2,CRM1_repeat_3 0.58 43.0 2.42e-01 80.3% 13.6%
5036014 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.58 42.0 3.89e-01 94.7% 61.1%
3995364 109.4.1.910 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_MROH2B_C 0.56 36.0 2.24e-01 72.4% 10.1%
3592815 3121.1.1.0 ↗ a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain 0.55 37.0 3.43e-01 72.4% 50.5%
3923219 5001.1.1.44 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srv 0.55 45.0 2.99e-01 90.8% 45.7%
3939830 5001.1.1.66 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Srg 0.54 44.0 3.04e-01 89.5% 29.2%
3929383 5001.1.1.66 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Srg 0.54 44.0 2.93e-01 90.8% 46.5%
5074053 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.53 29.0 2.70e-01 86.8% 35.2%
4939519 101.1.2.30 ↗ alpha arrays › HTH › HTH › winged helix domain › TrmB 0.52 47.0 4.16e-01 100.0% 80.0%
5082483 4038.1.1.1 ↗ alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Phage_portal 0.52 37.0 2.80e-01 75.0% 30.3%
3928473 5001.1.1.66 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Srg 0.52 39.0 2.64e-01 81.6% 21.0%
3409557 5001.1.1.5 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_3 0.52 41.0 2.94e-01 90.8% 26.9%
3889291 5050.1.1.6 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › OATP 0.51 40.0 2.84e-01 89.5% 25.9%
5005923 5061.1.1.1 ↗ alpha complex topology › Preprotein translocase SecY subunit › Preprotein translocase SecY subunit › Preprotein translocase SecY subunit › SecY 0.50 41.0 2.60e-01 94.7% 28.4%
4546878 5061.1.1.2 ↗ alpha complex topology › Preprotein translocase SecY subunit › Preprotein translocase SecY subunit › Preprotein translocase SecY subunit › SecY,Plug_translocon 0.50 41.0 2.60e-01 94.7% 28.4%
4940192 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.50 43.0 3.74e-01 96.1% 62.3%
3899472 5050.1.1.6 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › OATP 0.50 44.0 3.04e-01 100.0% 28.5%
3199170 223.2.1.9 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Sedlin_N 0.50 34.0 2.73e-01 71.1% 34.5%
3413217 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.50 41.0 3.59e-01 90.8% 61.7%