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NC_012530.1__YP_002790836.1__lb338_phage_157__00157

Bact-Vir

NC_012530.1__YP_002790836.1__lb338_phage_157__00157

Identity

Accession:
NC_012530 ↗
Kingdom:
phage

Quality

82.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Mooreparkvirus› Lactobacillus_phage_Lb338-1

TaxID: 2892342

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-138
PDB
Domain cluster: rep: NC_047744.1__YP_009784358.1__QLX39_gp057__00057__D3-148
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ei5A02 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.61 35.0 4.38e-01 87.4% 92.7%
4kc5C03 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.57 40.0 3.06e-01 71.9% 79.5%
3c4sA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 26.0 3.71e-01 88.1% 100.0%
1ib8A02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.56 29.0 3.88e-01 95.6% 100.0%
6r3wA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 46.0 4.42e-01 90.4% 95.7%
5mu3B00 3.40.50.12050 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.56 35.0 3.28e-01 78.5% 51.5%
3htyA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.55 37.0 4.25e-01 88.9% 100.0%
4f88102 3.90.1720.60 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.54 33.0 2.89e-01 97.0% 38.0%
5bp3B00 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.53 41.0 3.25e-01 83.0% 94.3%
2as9B01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.52 26.0 2.91e-01 93.3% 58.4%
3p8bB02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.52 26.0 3.46e-01 94.8% 98.4%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.51 25.0 3.38e-01 80.7% 93.8%
1wlgA02 2.60.98.20 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › Flagellar hook protein FlgE 0.51 42.0 4.20e-01 88.9% 94.3%
4xrtA02 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.50 36.0 3.47e-01 74.8% 80.6%
ECOD (31)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3709245 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 30.0 3.66e-01 88.9% 71.8%
3929373 4.1.1.233 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.59 28.0 3.98e-01 91.1% 100.0%
3315951 220.1.1.86 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › ZGRF1-like_N 0.59 35.0 4.37e-01 86.7% 100.0%
3173251 4051.1.1.1 ↗ a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F_actin_cap_B 0.59 45.0 4.19e-01 80.7% 83.5%
3719783 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 37.0 4.32e-01 99.3% 92.6%
3924375 4.1.1.237 ↗ beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.57 30.0 3.85e-01 96.3% 89.3%
490 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.57 32.0 4.08e-01 97.8% 98.6%
3632407 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 42.0 4.49e-01 96.3% 88.0%
4625654 4.1.1.445 ↗ beta barrels › SH3 › SH3 › SH3 › Spore_GerQ 0.57 31.0 3.90e-01 94.8% 92.0%
4527793 9.1.1.12 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › THAP4_heme-bd 0.56 46.0 4.39e-01 88.9% 93.7%
4447762 9.1.1.12 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › THAP4_heme-bd 0.56 46.0 4.40e-01 90.4% 95.0%
3197091 219.1.1.93 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF6540 0.55 39.0 4.10e-01 72.6% 98.4%
3930366 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 26.0 3.57e-01 94.1% 100.0%
4024274 4.1.1.17 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.53 30.0 3.38e-01 94.1% 69.5%
3933892 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 26.0 3.55e-01 88.9% 100.0%
3368864 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.53 27.0 3.66e-01 94.8% 98.5%
3672735 4.1.1.303 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_retrovirus 0.53 27.0 3.64e-01 92.6% 98.5%
3510681 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 30.0 3.77e-01 85.9% 97.3%
3342304 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 35.0 3.36e-01 85.2% 57.4%
3804236 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 35.0 3.46e-01 85.9% 63.6%
3445812 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 35.0 3.53e-01 85.2% 65.0%
3972703 9.1.1.17 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › MoaF 0.52 37.0 4.14e-01 90.4% 94.3%
4251101 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 31.0 3.79e-01 97.8% 92.9%
4024240 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 29.0 3.57e-01 97.0% 90.0%
4598590 4.1.1.303 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_retrovirus 0.52 27.0 3.54e-01 94.8% 95.7%
1503651 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.52 28.0 3.38e-01 99.3% 83.7%
3841414 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.51 28.0 3.62e-01 100.0% 100.0%
3642325 9.1.1.29 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › BFA1_C 0.51 42.0 4.05e-01 89.6% 91.5%
2070070 4998.1.1.1 ↗ beta sandwiches › Flagellar hook protein flgE D2 domain-like › Flagellar hook protein flgE D2 domain › Flagellar hook protein flgE D2 domain › FlgE_D2 0.51 42.0 4.16e-01 88.9% 91.7%
3481723 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.51 38.0 4.05e-01 94.8% 91.3%
3925589 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.50 27.0 3.58e-01 91.9% 100.0%
D2 high residues 146-223
PDB
Domain cluster: rep: NC_028805.1__YP_009199102.1__AVV11_gp150__00041__D695-776
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02368.25 best Big_2 59.7 3.00e-16 97.4% 93.7%