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NC_012530.1__YP_002790844.1__lb338_phage_165__00165

Bact-Vir

NC_012530.1__YP_002790844.1__lb338_phage_165__00165

Identity

Accession:
NC_012530 ↗
Kingdom:
phage

Quality

76.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Mooreparkvirus› Lactobacillus_phage_Lb338-1

TaxID: 2892342

Cluster

View cluster (7 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-149
PDB
Domain cluster: rep: OQ129426.1__WFG33958.1__F10086_36__00036__D10-175
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2rs7A01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.62 25.0 3.52e-01 95.3% 75.7%
5uj1A03 2.70.20.10 Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Topoisomerase I, domain 3 0.59 41.0 3.90e-01 100.0% 61.4%
1epaA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 40.0 3.98e-01 100.0% 75.6%
2cztA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 39.0 3.93e-01 98.0% 76.1%
2hngA00 3.10.420.10 Alpha Beta › Roll › Bacterial Protein-export protein SecB › SecB-like 0.51 28.0 3.05e-01 92.6% 63.2%
3l4rA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 38.0 3.87e-01 100.0% 78.1%
2ra6C00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 36.0 3.71e-01 96.6% 76.2%
1gkaB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.50 38.0 3.66e-01 99.3% 68.4%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4644143 504.1.1.0 ↗ a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB 0.65 29.0 3.15e-01 94.0% 48.5%
3514856 1181.1.1.0 ↗ 0.58 27.0 3.88e-01 93.3% 90.7%
5010189 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.58 30.0 3.16e-01 98.0% 53.2%
3242794 4252.1.1.0 ↗ beta barrels › AttH-like › AttH-like › AttH-like 0.52 39.0 4.36e-01 89.9% 99.1%
5004871 331.4.1.0 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.52 26.0 3.38e-01 89.9% 81.1%
4988451 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.51 32.0 3.64e-01 93.3% 81.7%
5062234 331.9.1.0 ↗ a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain 0.50 31.0 3.42e-01 98.7% 75.8%
D2 high residues 164-261
PDB
Domain cluster: rep: OQ129426.1__WFG33958.1__F10086_36__00036__D184-294
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3fm2A00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.73 65.0 5.87e-01 96.9% 74.4%
5exvC00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.73 67.0 5.57e-01 100.0% 60.0%
2oviA00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.72 66.0 5.57e-01 100.0% 62.0%
3fssA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.72 48.0 5.15e-01 90.8% 79.1%
2yf0A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.71 50.0 5.26e-01 83.7% 81.6%
3na2A00 3.40.1570.20 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › 0.71 61.0 5.46e-01 94.9% 69.6%
5ejrA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.69 45.0 4.93e-01 83.7% 81.2%
2gcjA01 2.30.29.150 Mainly Beta › Roll › PH-domain like › 0.68 52.0 4.68e-01 87.8% 59.7%
4ifsA01 2.30.29.150 Mainly Beta › Roll › PH-domain like › 0.67 52.0 4.66e-01 87.8% 60.6%
3u12A00 2.30.29.180 Mainly Beta › Roll › PH-domain like › Ubiquitin carboxyl-terminal hydrolase 26/29/37, pleckstrin homology-like domain 0.67 54.0 5.35e-01 87.8% 81.7%
1a15A00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.63 29.0 3.48e-01 74.5% 62.7%
7byjA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 46.0 4.71e-01 83.7% 78.9%
1y5oA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 50.0 4.77e-01 87.8% 79.1%
1z87A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 46.0 4.61e-01 84.7% 80.0%
2ktsA01 2.40.128.270 Mainly Beta › Beta Barrel › Lipocalin › 0.59 44.0 4.36e-01 77.6% 100.0%
4osnA00 2.30.29.100 Mainly Beta › Roll › PH-domain like › 0.59 46.0 4.47e-01 84.7% 94.5%
4qxaB00 2.30.29.230 Mainly Beta › Roll › PH-domain like › 0.59 47.0 4.16e-01 87.8% 66.7%
4chjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 50.0 4.66e-01 100.0% 75.0%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.57 39.0 4.24e-01 94.9% 88.3%
3rwxA01 2.40.128.340 Mainly Beta › Beta Barrel › Lipocalin › 0.57 43.0 4.00e-01 78.6% 90.8%
2la7A01 2.40.128.270 Mainly Beta › Beta Barrel › Lipocalin › 0.56 50.0 4.59e-01 100.0% 97.7%
3obyA01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.55 46.0 4.51e-01 100.0% 82.6%
2qi2A01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.55 46.0 4.50e-01 100.0% 85.6%
4fflA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.53 43.0 3.14e-01 87.8% 33.6%
2grgA01 3.40.1840.10 Alpha Beta › 3-Layer(aba) Sandwich › Profilin-like › YNR034W-A-like 0.52 39.0 4.24e-01 100.0% 95.2%
2q5fA02 2.60.200.30 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › Probable inorganic polyphosphate/atp-NAD kinase; domain 2 0.51 40.0 3.66e-01 85.7% 97.8%
1aqbA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 44.0 3.72e-01 100.0% 74.3%
2ou5A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.50 42.0 3.48e-01 91.8% 90.3%
3tiiA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.50 32.0 3.72e-01 98.0% 95.4%
ECOD (63)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3699518 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.75 53.0 4.88e-01 84.7% 57.6%
3591463 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.75 53.0 5.07e-01 87.8% 63.5%
3967527 4216.1.1.1 ↗ a+b duplicates or obligate multimers › Heme iron utilization protein-like › Heme iron utilization protein-like › Heme iron utilization protein-like › HemS 0.74 68.0 5.59e-01 100.0% 58.0%
1758949 4216.1.1.1 ↗ a+b duplicates or obligate multimers › Heme iron utilization protein-like › Heme iron utilization protein-like › Heme iron utilization protein-like › HemS 0.73 66.0 5.92e-01 100.0% 72.1%
3531579 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.72 52.0 4.44e-01 84.7% 47.7%
4936961 220.1.1.76 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.72 44.0 4.77e-01 76.5% 71.8%
4949986 220.1.1.219 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch 0.71 57.0 5.52e-01 84.7% 78.2%
3899369 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.71 52.0 4.45e-01 84.7% 49.3%
3249490 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.71 53.0 5.00e-01 87.8% 66.1%
140040 4216.1.1.3 ↗ a+b duplicates or obligate multimers › Heme iron utilization protein-like › Heme iron utilization protein-like › Heme iron utilization protein-like › LFE_1968-like 0.71 61.0 5.46e-01 94.9% 69.6%
4936963 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.70 47.0 5.05e-01 90.8% 80.0%
4027872 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.69 51.0 5.21e-01 83.7% 78.9%
4943079 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.69 54.0 4.59e-01 87.8% 52.3%
3704921 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.69 56.0 4.76e-01 86.7% 71.6%
3251857 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.69 51.0 4.59e-01 84.7% 57.0%
4029828 220.1.1.59 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH1_SSRP1-like 0.69 53.0 4.67e-01 87.8% 57.1%
3171728 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.68 55.0 4.80e-01 85.7% 66.2%
3417244 220.1.1.64 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C1_MyoVII 0.68 48.0 4.94e-01 87.8% 75.8%
3801512 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.68 51.0 4.78e-01 87.8% 64.2%
2712015 220.1.1.19 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Rttp106-like_middle 0.68 46.0 5.04e-01 90.8% 85.2%
4026143 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.68 50.0 4.84e-01 87.8% 69.1%
4137634 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.68 47.0 4.79e-01 84.7% 73.7%
3785371 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.67 53.0 4.79e-01 84.7% 65.9%
3829886 220.1.1.19 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Rttp106-like_middle 0.67 49.0 5.40e-01 84.7% 96.2%
4988664 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.67 47.0 5.22e-01 87.8% 96.0%
3931704 220.1.1.20 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_TFIIH 0.67 52.0 5.01e-01 87.8% 73.6%
5016434 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.67 40.0 4.39e-01 87.8% 76.0%
5022727 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.66 47.0 4.02e-01 84.7% 48.0%
2897750 220.1.1.59 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH1_SSRP1-like 0.66 51.0 4.35e-01 87.8% 52.3%
3472026 220.1.1.27 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_RBD 0.66 52.0 4.89e-01 87.8% 69.2%
3278616 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.66 45.0 4.19e-01 87.8% 56.0%
3833943 220.1.1.128 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_SPT16 0.65 52.0 4.26e-01 84.7% 48.0%
3222570 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.65 53.0 4.98e-01 85.7% 77.4%
3903484 220.1.1.64 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C1_MyoVII 0.65 47.0 4.59e-01 84.7% 68.2%
3511439 220.1.1.193 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_UBFD1_C 0.65 49.0 4.72e-01 87.8% 69.9%
3616221 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.65 50.0 4.29e-01 87.8% 50.3%
3626366 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.65 49.0 4.79e-01 87.8% 71.8%
3998850 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.64 48.0 4.63e-01 83.7% 70.0%
5033892 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 41.0 4.78e-01 92.9% 96.9%
4584002 220.1.1.219 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch 0.64 52.0 5.12e-01 87.8% 81.9%
4139778 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.64 42.0 4.67e-01 98.0% 89.0%
3743110 220.1.1.19 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Rttp106-like_middle 0.64 50.0 4.90e-01 87.8% 77.1%
3949336 220.1.1.216 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Helicase_IV_N 0.64 45.0 4.36e-01 83.7% 65.5%
5081087 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.63 52.0 5.01e-01 87.8% 81.8%
3242544 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.63 48.0 4.42e-01 81.6% 67.7%
3231960 192.5.1.0 ↗ alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat 0.63 47.0 3.74e-01 84.7% 38.0%
4028811 10.13.1.0 ↗ beta sandwiches › jelly-roll › Calcium ATPase, transduction domain A › Calcium ATPase, transduction domain A 0.60 49.0 4.69e-01 88.8% 76.5%
3269549 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 48.0 4.11e-01 87.8% 54.2%
3713703 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 48.0 4.58e-01 90.8% 73.9%
4344687 220.1.1.19 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Rttp106-like_middle 0.59 48.0 4.71e-01 86.7% 84.8%
4539117 220.1.1.19 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Rttp106-like_middle 0.59 48.0 4.15e-01 86.7% 58.7%
3237220 220.1.1.84 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_15 0.58 45.0 4.33e-01 84.7% 77.4%
5016314 220.1.1.219 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch 0.58 47.0 4.08e-01 87.8% 62.0%
4999705 4.1.2.2 ↗ beta barrels › SH3 › SH3 › Stringent starvation protein B, SspB › MJ1316 0.55 43.0 4.38e-01 87.8% 88.4%
3502388 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 35.0 3.88e-01 99.0% 82.7%
4976092 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 39.0 4.05e-01 98.0% 81.1%
3915194 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.55 42.0 2.80e-01 80.6% 92.5%
3506182 5.1.5.85 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40_RFWD3 0.54 41.0 2.77e-01 79.6% 98.9%
3245986 207.1.1.81 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.54 32.0 2.40e-01 74.5% 26.1%
4420096 56.1.1.1 ↗ beta sandwiches › Epsilon subunit of F1F0-ATP synthase-N › Epsilon subunit of F1F0-ATP synthase-N › Epsilon subunit of F1F0-ATP synthase-N › ATP-synt_DE_N 0.53 36.0 3.82e-01 70.4% 95.3%
1199755 206.1.3.8 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATP-grasp_3 0.53 43.0 3.15e-01 87.8% 34.3%
3449040 9.1.1.34 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › PAP_fibrillin 0.51 44.0 3.72e-01 100.0% 75.4%
3787968 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.50 39.0 2.53e-01 81.6% 53.0%