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NC_012530.1__YP_002790846.1__lb338_phage_167__00167

Bact-Vir

NC_012530.1__YP_002790846.1__lb338_phage_167__00167

Identity

Accession:
NC_012530 ↗
Kingdom:
phage

Quality

77.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Mooreparkvirus› Lactobacillus_phage_Lb338-1

TaxID: 2892342

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-18_102-192
PDB
D2 high residues 25-94
PDB
Domain cluster: representative
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1r0mA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.66 53.0 4.36e-01 88.6% 92.3%
1u9tA01 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.63 51.0 3.98e-01 91.4% 59.5%
2qq6A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.60 46.0 3.98e-01 85.7% 99.1%
1pvwA00 3.90.870.10 Alpha Beta › Alpha-Beta Complex › DHBP synthase › DHBP synthase 0.60 51.0 3.58e-01 94.3% 97.3%
1ko2A00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.59 47.0 3.30e-01 87.1% 92.6%
3sreA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.58 47.0 3.14e-01 92.9% 85.7%
1srqA01 3.30.1120.160 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.58 45.0 3.68e-01 85.7% 54.3%
4nehA01 2.130.10.130 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Integrin alpha, N-terminal 0.58 49.0 3.09e-01 95.7% 91.0%
6jt6A00 2.60.40.1210 Mainly Beta › Sandwich › Immunoglobulin-like › Cellobiose dehydrogenase, cytochrome domain 0.57 50.0 3.69e-01 100.0% 65.1%
4m7dA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.57 47.0 4.84e-01 100.0% 98.5%
4irzA01 2.130.10.130 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Integrin alpha, N-terminal 0.57 47.0 2.93e-01 92.9% 74.1%
4id2A00 2.40.128.510 Mainly Beta › Beta Barrel › Lipocalin › Protein of unknown function DUF4738 0.57 38.0 3.10e-01 70.0% 35.3%
5nqdA01 3.30.200.200 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › 0.57 45.0 3.43e-01 87.1% 87.2%
2e50B02 3.30.1120.90 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › Nucleosome assembly protein 0.56 39.0 3.47e-01 75.7% 97.3%
1xkiA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 45.0 3.83e-01 94.3% 75.8%
2o62A01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 46.0 3.83e-01 94.3% 90.1%
1a31A03 3.90.15.10 Alpha Beta › Alpha-Beta Complex › Topoisomerase I; Chain A, domain 3 › Topoisomerase I; Chain A, domain 3 0.56 36.0 2.86e-01 92.9% 31.3%
1epaA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 45.0 3.61e-01 100.0% 73.1%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 41.0 4.23e-01 100.0% 96.8%
1mpgA01 3.30.310.20 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › DNA-3-methyladenine glycosylase AlkA, N-terminal domain 0.52 42.0 3.68e-01 92.9% 84.8%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3614247 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.63 54.0 4.55e-01 98.6% 86.4%
4975786 297.1.1.1 ↗ a+b complex topology › YrdC/RibB › YrdC/RibB › YrdC/RibB › DHBP_synthase 0.62 53.0 3.66e-01 94.3% 94.9%
3596066 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 52.0 4.35e-01 97.1% 81.6%
3967506 300.1.1.8 ↗ a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_2 0.61 46.0 3.21e-01 82.9% 65.4%
3223910 210.1.2.8 ↗ a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › TANGO2 0.60 42.0 2.81e-01 71.4% 30.9%
2866962 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.60 51.0 4.51e-01 100.0% 63.0%
3917645 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 47.0 3.98e-01 85.7% 82.5%
3927305 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 45.0 3.93e-01 84.3% 90.0%
3279607 9.3.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like 0.58 48.0 4.35e-01 94.3% 99.0%
224067 6098.1.1.1 ↗ a+b two layers › BACOVA_05496-like › BACOVA_05496-like › BACOVA_05496-like › DUF4738 0.57 38.0 3.10e-01 70.0% 35.3%
3763789 220.1.1.186 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_CAYP2 0.57 44.0 3.59e-01 88.6% 74.5%
3257642 6.1.1.4 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › Ricin_B_lectin 0.56 45.0 3.31e-01 91.4% 70.2%
4356796 1001.1.1.1 ↗ a+b two layers › Formate dehydrogenase/DMSO reductase, domain 1 › Formate dehydrogenase/DMSO reductase, domain 1 › Formate dehydrogenase/DMSO reductase, domain 1 › Molybdop_Fe4S4 0.56 39.0 3.95e-01 74.3% 81.4%
3435335 5.1.3.6 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 0.53 41.0 2.79e-01 90.0% 79.7%
3646521 4.2.1.4 ↗ beta barrels › SH3 › SAND › SAND › TDBD 0.52 39.0 3.91e-01 85.7% 88.0%
3933294 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.52 45.0 4.00e-01 100.0% 81.0%
3612838 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.52 35.0 3.33e-01 71.4% 92.2%
4890891 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.52 40.0 3.29e-01 88.6% 81.2%
3506773 214.1.1.9 ↗ a+b two layers › SH2 › SH2 › SH2 › DUF7063 0.51 44.0 3.75e-01 100.0% 80.8%
3600929 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 43.0 4.09e-01 100.0% 87.1%
5020252 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.51 40.0 3.53e-01 100.0% 55.0%