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NC_012530.1__YP_002790862.1__lb338_phage_183__00183

Bact-Vir

NC_012530.1__YP_002790862.1__lb338_phage_183__00183

Identity

Accession:
NC_012530 ↗
Kingdom:
phage

Quality

78.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Mooreparkvirus› Lactobacillus_phage_Lb338-1

TaxID: 2892342

Cluster

View cluster (8 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 47-114
PDB
Domain cluster: representative
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1vq8T00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.66 50.0 4.16e-01 82.4% 68.1%
1boqA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.59 40.0 3.49e-01 72.1% 60.7%
3cpxA02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.57 40.0 4.15e-01 73.5% 100.0%
2daqA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 44.0 3.80e-01 85.3% 80.9%
3pfsB00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 47.0 3.84e-01 92.6% 93.1%
4ngdA02 2.170.260.10 Mainly Beta › Beta Complex › paz domain › paz domain 0.56 37.0 3.24e-01 70.6% 98.2%
3k8uA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.56 40.0 3.36e-01 79.4% 55.7%
1whlA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.55 41.0 3.70e-01 79.4% 96.8%
4kktA02 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.55 37.0 3.25e-01 70.6% 94.3%
4ii1A02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 37.0 4.04e-01 72.1% 100.0%
3p8bB02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.54 41.0 4.31e-01 80.9% 100.0%
5i7pA02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.53 32.0 3.65e-01 95.6% 85.4%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.52 40.0 3.94e-01 85.3% 86.3%
4yhbA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.52 40.0 3.28e-01 83.8% 76.7%
4bq6F00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.52 37.0 3.02e-01 79.4% 97.3%
5ygbA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.51 40.0 3.88e-01 86.8% 86.3%
2zxqA05 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 37.0 2.73e-01 79.4% 99.0%
4bi3A01 3.90.1720.80 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.50 36.0 3.36e-01 77.9% 65.9%
6bhdA03 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.50 35.0 3.63e-01 73.5% 85.7%
2l89A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.50 43.0 3.71e-01 97.1% 85.2%
ECOD (35)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4071168 4.1.1.95 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L26 0.67 51.0 4.28e-01 82.4% 70.4%
5037204 4.1.1.95 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L26 0.66 51.0 4.21e-01 82.4% 67.5%
5028926 4.1.1.95 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L26 0.66 51.0 4.00e-01 82.4% 57.9%
3340031 4.1.1.295 ↗ beta barrels › SH3 › SH3 › SH3 › KOW, Ribosomal_L26 0.66 51.0 4.03e-01 82.4% 60.0%
4180317 4.1.1.295 ↗ beta barrels › SH3 › SH3 › SH3 › KOW, Ribosomal_L26 0.66 51.0 4.13e-01 82.4% 64.8%
4279051 4.1.1.95 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L26 0.66 51.0 4.38e-01 82.4% 77.1%
5054535 4.1.1.95 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L26 0.66 51.0 4.31e-01 82.4% 74.5%
4977697 4.1.1.95 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L26 0.66 51.0 4.27e-01 82.4% 71.7%
4601878 4.1.1.295 ↗ beta barrels › SH3 › SH3 › SH3 › KOW, Ribosomal_L26 0.66 50.0 4.05e-01 82.4% 62.3%
2106291 4.1.1.95 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L26 0.65 49.0 3.93e-01 80.9% 59.7%
4937910 4.1.1.95 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L26 0.63 52.0 4.15e-01 88.2% 75.4%
4994549 4.1.1.95 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L26 0.63 52.0 3.93e-01 91.2% 69.1%
3900017 4.1.1.284 ↗ beta barrels › SH3 › SH3 › SH3 › SBNO 0.61 47.0 3.93e-01 83.8% 57.5%
3598271 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 46.0 3.52e-01 83.8% 50.6%
3624441 4.1.1.24 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L14e 0.60 46.0 3.65e-01 82.4% 60.0%
3176275 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.60 48.0 3.96e-01 86.8% 76.7%
3725498 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 43.0 4.26e-01 75.0% 100.0%
5008350 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.60 43.0 4.14e-01 77.9% 91.3%
3662854 4.1.1.187 ↗ beta barrels › SH3 › SH3 › SH3 › DIRP 0.59 42.0 3.18e-01 75.0% 84.8%
3738332 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.58 51.0 3.86e-01 100.0% 72.6%
3326980 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.58 42.0 4.48e-01 77.9% 95.0%
3373330 4.1.1.337 ↗ beta barrels › SH3 › SH3 › SH3 › CSD_RNase_II 0.57 44.0 4.30e-01 85.3% 89.3%
3332613 4.1.1.284 ↗ beta barrels › SH3 › SH3 › SH3 › SBNO 0.56 41.0 3.53e-01 82.4% 60.8%
3660358 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 40.0 4.27e-01 77.9% 100.0%
3913687 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.55 45.0 4.16e-01 92.6% 77.8%
3926175 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 43.0 4.06e-01 88.2% 81.2%
3409896 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.54 44.0 3.89e-01 92.6% 72.4%
3502695 391.1.1.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.54 35.0 3.83e-01 95.6% 90.0%
3709029 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 39.0 4.05e-01 77.9% 100.0%
3195050 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.53 45.0 4.03e-01 95.6% 74.7%
3515280 391.1.1.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.52 34.0 3.80e-01 98.5% 100.0%
3558188 4.1.1.101 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.52 40.0 3.92e-01 86.8% 90.7%
3555931 4.1.1.322 ↗ beta barrels › SH3 › SH3 › SH3 › GPKOW_C 0.52 41.0 3.47e-01 86.8% 93.9%
3574613 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.51 37.0 3.38e-01 80.9% 76.0%
3279952 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 38.0 3.53e-01 85.3% 85.3%