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NC_012530.1__YP_002790872.1__lb338_phage_193__00193

Bact-Vir

NC_012530.1__YP_002790872.1__lb338_phage_193__00193

Identity

Accession:
NC_012530 ↗
Kingdom:
phage

Quality

80.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Mooreparkvirus› Lactobacillus_phage_Lb338-1

TaxID: 2892342

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-63_78-85
PDB
Domain cluster: representative
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3fssA01 2.30.29.120 Mainly Beta › Roll › PH-domain like › 0.71 47.0 3.80e-01 100.0% 35.3%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.67 46.0 4.77e-01 92.8% 75.8%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.63 44.0 4.58e-01 92.8% 79.4%
4gnxC03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 44.0 3.28e-01 73.9% 77.6%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.62 44.0 4.40e-01 92.8% 73.9%
1v5mA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 46.0 3.77e-01 84.1% 44.9%
3upuA03 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.60 52.0 4.20e-01 95.7% 91.6%
2bujB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.60 55.0 4.94e-01 100.0% 89.4%
3tdgA01 3.10.450.520 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 45.0 4.63e-01 100.0% 87.9%
6phxA01 2.70.98.60 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › alpha-galactosidase from lactobacil brevis 0.58 50.0 3.34e-01 100.0% 44.1%
2x7gA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.58 53.0 4.88e-01 100.0% 92.0%
3mi6A01 2.70.98.60 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › alpha-galactosidase from lactobacil brevis 0.58 49.0 3.29e-01 100.0% 44.7%
6jhpA01 2.70.98.60 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › alpha-galactosidase from lactobacil brevis 0.58 49.0 3.32e-01 100.0% 42.4%
4e2xA01 6.20.50.110 Special › Other non-globular › N-terminal domain of TfIIb › Methyltransferase, zinc-binding domain 0.58 40.0 4.44e-01 72.5% 100.0%
1l3aA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.55 38.0 2.96e-01 72.5% 55.4%
3vwaA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.55 49.0 4.50e-01 98.6% 93.3%
3s95A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.55 48.0 4.41e-01 95.7% 93.2%
2rkuA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.55 47.0 4.33e-01 94.2% 93.3%
4euuA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.54 47.0 4.38e-01 100.0% 97.8%
4bwkB01 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.54 48.0 3.24e-01 100.0% 35.1%
8jx6A02 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.54 46.0 4.07e-01 97.1% 98.1%
3grdA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 47.0 3.78e-01 100.0% 84.1%
3wa2X01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 43.0 4.02e-01 100.0% 75.9%
5l37C00 2.40.50.220 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › EutN/Ccml 0.51 42.0 3.88e-01 89.9% 83.7%
1fmbA00 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.51 40.0 3.63e-01 94.2% 81.7%
2krtA01 3.10.450.270 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 38.0 3.40e-01 84.1% 60.2%
3soyA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 43.0 3.50e-01 100.0% 85.2%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3608236 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.67 47.0 4.82e-01 92.8% 76.9%
4405445 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.62 46.0 4.63e-01 100.0% 80.0%
4030715 220.1.1.4 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Ran_BP1 0.61 51.0 4.22e-01 100.0% 50.8%
3472947 9.1.1.53 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › DUF7044 0.59 47.0 4.04e-01 100.0% 54.5%
4024016 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 47.0 4.05e-01 94.2% 68.0%
3619357 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.59 46.0 3.60e-01 87.0% 44.5%
1560737 719.1.1.0 ↗ beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain 0.58 49.0 4.93e-01 94.2% 97.1%
3882544 243.3.1.4 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Latexin_N 0.57 44.0 3.75e-01 85.5% 71.7%
3744143 220.1.1.32 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Sec3-PIP2_bind 0.57 50.0 3.95e-01 100.0% 51.3%
4022367 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 42.0 3.76e-01 100.0% 56.0%
2797459 220.1.1.3 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1,Retinal 0.56 46.0 3.91e-01 91.3% 55.8%
4984547 1.1.1.18 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp_protease_2 0.56 46.0 3.93e-01 94.2% 80.5%
3645341 2.1.1.76 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 0.55 45.0 3.47e-01 92.8% 50.9%
3781523 243.1.1.42 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › MMU163 0.55 47.0 3.81e-01 100.0% 81.1%
3470360 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.55 48.0 3.88e-01 100.0% 60.0%
3203022 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.54 47.0 3.84e-01 100.0% 88.9%
3409342 101.1.12.3 ↗ alpha arrays › HTH › HTH › HTH motif inserted in other structures › SAS-6_N 0.54 48.0 3.82e-01 100.0% 97.1%
3268888 2.1.1.44 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Dna2 0.54 46.0 4.21e-01 94.2% 77.8%
3666058 2.1.1.44 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Dna2 0.53 45.0 4.04e-01 94.2% 72.6%
3808505 243.3.1.1 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Cystatin 0.53 46.0 4.30e-01 97.1% 87.1%
3973652 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.52 46.0 3.78e-01 100.0% 84.5%
5028505 2.1.1.1 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosom_S12_S23 0.52 44.0 3.49e-01 92.8% 55.7%
3451025 243.3.1.19 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF3615 0.52 46.0 4.08e-01 100.0% 86.0%
3696153 2003.1.2.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.52 39.0 2.58e-01 84.1% 81.3%
4289288 330.6.1.1 ↗ a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer 0.51 45.0 3.68e-01 100.0% 56.2%
5082511 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 43.0 3.79e-01 95.7% 71.4%
3670182 2.1.1.1 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosom_S12_S23 0.50 42.0 3.46e-01 91.3% 58.4%
4314840 2.1.1.239 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › CaKB 0.50 36.0 3.13e-01 79.7% 62.5%