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NC_012530.1__YP_002790873.1__lb338_phage_194__00194

Bact-Vir

NC_012530.1__YP_002790873.1__lb338_phage_194__00194

Identity

Accession:
NC_012530 ↗
Kingdom:
phage

Quality

92.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Mooreparkvirus› Lactobacillus_phage_Lb338-1

TaxID: 2892342

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-92
PDB
Domain cluster: rep: NC_048048.2__YP_009810236.1__HOU03_gp024__00024__D4-98
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF26096.1 best DUF8033 70.5 9.90e-20 88.8% 96.2%
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2o5nA02 3.30.500.30 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › 0.65 50.0 4.13e-01 82.0% 82.2%
1hyrC01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.64 49.0 3.93e-01 83.1% 83.9%
1q7hA01 3.10.450.120 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Pre-PUA domain; domain 1 0.59 41.0 4.77e-01 86.5% 100.0%
3dbxA01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.58 45.0 3.64e-01 84.3% 78.9%
3vsmA03 2.60.40.4340 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 50.0 4.93e-01 95.5% 95.7%
3b8bA01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.57 49.0 4.03e-01 93.3% 69.8%
3d2uE01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.57 44.0 3.55e-01 84.3% 84.6%
1e2tA02 3.30.1120.150 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.57 31.0 3.20e-01 80.9% 55.8%
3l9rA01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.57 45.0 3.65e-01 86.5% 81.7%
1w5rA01 3.30.2140.10 Alpha Beta › 2-Layer Sandwich › Arylamine N-acetyltransferase fold › Arylamine N-acetyltransferase 0.56 39.0 3.17e-01 71.9% 94.2%
1p0hA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.56 43.0 3.08e-01 84.3% 49.7%
1pqzA01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.55 37.0 3.20e-01 78.7% 44.5%
7zqiA01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.54 41.0 3.33e-01 82.0% 82.6%
7afrX02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.53 30.0 3.44e-01 79.8% 78.3%
4ba0A01 2.60.40.1760 Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31) 0.53 44.0 3.45e-01 93.3% 86.4%
3dlaB01 3.60.110.10 Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase 0.52 45.0 3.16e-01 98.9% 87.0%
2vqrA01 3.40.720.10 Alpha Beta › 3-Layer(aba) Sandwich › Alkaline Phosphatase, subunit A › Alkaline Phosphatase, subunit A 0.51 38.0 2.49e-01 83.1% 75.2%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4996528 243.6.1.0 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain 0.71 34.0 4.51e-01 74.2% 84.0%
4165617 865.1.1.0 ↗ beta complex topology › PheT/TilS domain › PheT/TilS domain › PheT/TilS domain 0.64 48.0 4.28e-01 79.8% 93.6%
4031639 241.7.1.1 ↗ a+b two layers › Type III secretory system chaperone-like › YgaC/TfoX-N like › YgaC/TfoX-N like › TfoX_N 0.60 41.0 4.14e-01 91.0% 70.0%
5044669 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.60 46.0 3.79e-01 84.3% 82.4%
3842370 233.1.1.0 ↗ a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain 0.59 46.0 3.70e-01 83.1% 83.4%
1219772 233.1.1.1 ↗ a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_I 0.57 44.0 3.57e-01 84.3% 86.4%
4987739 2003.1.5.13 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Spermine_synth 0.56 48.0 3.59e-01 96.6% 82.6%
5067171 243.6.1.1 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › DUF1947 0.56 39.0 4.51e-01 88.8% 100.0%
3928477 77.3.1.4 ↗ beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain › PF28998 0.56 45.0 3.46e-01 86.5% 87.7%
5033945 243.6.1.1 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › DUF1947 0.55 41.0 4.60e-01 91.0% 100.0%
4026913 243.6.1.4 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › Pre-PUA 0.55 49.0 5.10e-01 96.6% 100.0%
5021241 243.6.1.0 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain 0.55 41.0 4.61e-01 88.8% 100.0%
4965842 2003.1.5.13 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Spermine_synth 0.55 47.0 3.36e-01 95.5% 77.0%
5057575 2003.1.5.13 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Spermine_synth 0.55 48.0 3.44e-01 100.0% 76.0%
3604572 243.6.1.1 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › DUF1947 0.54 40.0 4.53e-01 88.8% 100.0%
3755672 6129.1.1.1 ↗ beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD 0.53 41.0 3.21e-01 83.1% 47.5%
5053366 2003.1.5.13 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Spermine_synth 0.53 46.0 3.21e-01 100.0% 67.4%
3961571 3699.1.1.3 ↗ beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synth 0.53 43.0 3.95e-01 89.9% 96.7%
5056067 2003.1.5.13 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Spermine_synth 0.53 47.0 3.33e-01 100.0% 70.7%
3964807 9.7.1.2 ↗ beta barrels › Lipocalins/Streptavidin › Metalloprotease inhibitor › Metalloprotease inhibitor › PF28291 0.52 36.0 3.56e-01 80.9% 68.4%
3672532 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.51 39.0 3.72e-01 97.8% 68.2%
3991490 5.1.4.48 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › BBS1 0.51 40.0 2.57e-01 84.3% 38.0%
4176398 2003.1.5.13 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Spermine_synth 0.50 44.0 3.19e-01 100.0% 77.5%
3940283 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.50 41.0 2.90e-01 89.9% 81.3%
3620195 5.1.4.289 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, eIF2A, ANAPC4_WD40 0.50 40.0 2.86e-01 88.8% 81.0%
3515797 5.1.4.6 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,ANAPC4_WD40 0.50 40.0 2.84e-01 88.8% 78.2%
3915934 5.1.4.169 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RSE1_2nd 0.50 43.0 2.88e-01 98.9% 39.7%