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NC_012740.1__YP_002922170.1__EpJSE_00098__00098

Bact-Vir

NC_012740.1__YP_002922170.1__EpJSE_00098__00098

Identity

Accession:
NC_012740 ↗
Kingdom:
phage

Quality

88.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Krischvirus› Escherichia_phage_JSE

TaxID: 576789

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-87
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ct4A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 44.0 4.77e-01 84.9% 90.0%
3lx7A01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 34.0 4.29e-01 81.4% 100.0%
1av5A00 3.30.428.10 Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT-like 0.60 34.0 3.11e-01 96.5% 42.5%
3j7yD02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.59 38.0 3.94e-01 90.7% 70.4%
2in5A00 2.40.360.10 Mainly Beta › Beta Barrel › YmcC-like fold › YmcC-like 0.58 40.0 3.10e-01 70.9% 83.6%
3j7aF03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.57 40.0 4.35e-01 96.5% 90.1%
2hbpA00 2.30.30.700 Mainly Beta › Roll › SH3 type barrels. › SLA1 homology domain 1 0.56 36.0 4.05e-01 72.1% 86.4%
1vwxA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.56 39.0 4.01e-01 94.2% 77.5%
1quqB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 44.0 4.08e-01 94.2% 87.7%
1r8nA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.53 43.0 3.47e-01 91.9% 90.8%
2wfwB02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 38.0 4.26e-01 81.4% 100.0%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.52 35.0 3.63e-01 88.4% 76.6%
1qxmA02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.52 41.0 3.50e-01 87.2% 94.5%
4zn4A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 42.0 2.76e-01 91.9% 93.6%
2vvlG01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.50 40.0 2.92e-01 88.4% 87.9%
ECOD (46)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4998329 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 39.0 4.60e-01 73.3% 85.5%
3299797 4.1.1.306 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_VIII-1_N 0.69 38.0 4.39e-01 82.6% 76.7%
3817476 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.66 37.0 4.46e-01 86.0% 92.0%
3998022 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.65 38.0 4.44e-01 86.0% 87.3%
4998870 4.1.1.483 ↗ beta barrels › SH3 › SH3 › SH3 › RRXRR 0.65 39.0 3.98e-01 83.7% 60.0%
3964733 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 41.0 4.74e-01 94.2% 98.2%
3389432 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.64 49.0 5.20e-01 97.7% 94.7%
3419491 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 40.0 4.56e-01 70.9% 90.0%
3484007 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 41.0 4.47e-01 70.9% 84.3%
3868320 4.1.1.65 ↗ beta barrels › SH3 › SH3 › SH3 › 53-BP1_Tudor 0.62 36.0 4.08e-01 90.7% 76.9%
3511278 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 36.0 3.93e-01 70.9% 71.4%
4882420 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.61 36.0 4.25e-01 88.4% 98.0%
3577864 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.61 37.0 3.73e-01 82.6% 60.0%
3546309 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.61 42.0 4.50e-01 77.9% 84.0%
3485745 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.60 40.0 4.60e-01 77.9% 100.0%
3649741 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.60 37.0 3.93e-01 94.2% 70.7%
5000741 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.60 37.0 4.17e-01 83.7% 83.1%
3553983 4.1.1.233 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.60 37.0 4.20e-01 82.6% 88.3%
4001172 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.59 43.0 4.65e-01 86.0% 94.3%
3554026 4.1.1.233 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.59 36.0 4.13e-01 82.6% 88.3%
3520270 101.35.1.5 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH1 0.58 31.0 2.95e-01 77.9% 40.0%
2664854 4.1.1.38 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C 0.57 42.0 3.98e-01 100.0% 64.7%
5038340 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.57 36.0 3.83e-01 79.1% 72.0%
3758025 4.1.1.38 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C 0.57 41.0 3.70e-01 98.8% 54.2%
3177392 2.1.1.52 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Stn1 0.57 49.0 3.81e-01 95.3% 77.4%
2641775 4.1.1.38 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C 0.57 42.0 3.64e-01 100.0% 50.7%
3495652 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 42.0 3.47e-01 100.0% 43.1%
3660244 4.1.1.141 ↗ beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor 0.56 40.0 4.25e-01 95.3% 88.0%
4300449 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.56 38.0 4.17e-01 95.3% 95.4%
4091533 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.55 40.0 4.39e-01 90.7% 95.7%
4271974 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.55 38.0 4.32e-01 98.8% 96.9%
3611989 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 40.0 3.39e-01 77.9% 60.0%
3476178 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 44.0 3.96e-01 87.2% 85.8%
5056826 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.55 36.0 4.00e-01 88.4% 89.2%
4275696 4.1.1.38 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C 0.54 42.0 3.67e-01 100.0% 55.4%
3243188 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.54 38.0 4.06e-01 82.6% 86.7%
4130134 3468.1.1.1 ↗ a+b two layers › HLTF protein HIRAN domain › HLTF protein HIRAN domain › HLTF protein HIRAN domain › HIRAN 0.54 37.0 3.20e-01 70.9% 65.0%
4629735 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 38.0 4.21e-01 100.0% 100.0%
3574847 220.1.1.20 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_TFIIH 0.53 39.0 3.32e-01 77.9% 64.1%
3574613 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.53 42.0 4.02e-01 94.2% 74.0%
3262589 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 43.0 3.94e-01 94.2% 92.5%
3581193 2004.1.1.250 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd 0.52 42.0 2.82e-01 90.7% 86.8%
3022070 4.1.1.140 ↗ beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.52 41.0 3.82e-01 87.2% 69.3%
3904256 5.1.4.255 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RCC1, RCC1_2, WD40_RLD 0.52 43.0 2.83e-01 95.3% 94.9%
3601508 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.51 42.0 2.89e-01 95.3% 88.9%
3610634 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 42.0 2.73e-01 90.7% 78.7%