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NC_012742.1__YP_002922632.1__phiL7_gp18__00018

Bact-Vir

NC_012742.1__YP_002922632.1__phiL7_gp18__00018

Identity

Accession:
NC_012742 ↗
Kingdom:
phage

Quality

84.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Eisenstarkvirus› Xanthomonas_phage_phiL7

TaxID: 538979

Cluster

View cluster (23 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 15-135
PDB
Domain cluster: rep: OQ067477.1__WCD44161.1__Lumi_022__00022__D8-128
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF08875.16 best DUF1833 43.7 3.00e-11 99.2% 82.0%
CATH (49)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3lb6C01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.70 38.0 4.40e-01 83.5% 72.7%
3cddA01 2.30.300.10 Mainly Beta › Roll › Phage tail proteins - horseshoe like beta roll fold › Baseplate protein-like domain - beta roll fold 0.70 52.0 4.48e-01 95.9% 51.1%
7y8sB03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.70 38.0 4.44e-01 84.3% 75.0%
1wruA01 2.30.300.10 Mainly Beta › Roll › Phage tail proteins - horseshoe like beta roll fold › Baseplate protein-like domain - beta roll fold 0.70 48.0 4.25e-01 94.2% 49.1%
2rdeA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.69 46.0 4.79e-01 96.7% 73.0%
2p4bB02 3.30.200.100 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › MucB/RseB, C-terminal domain 0.69 38.0 4.17e-01 81.8% 65.3%
7zxkB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.69 38.0 4.26e-01 85.1% 68.8%
1iarB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.69 37.0 4.17e-01 84.3% 67.4%
2jllA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.69 38.0 4.16e-01 86.8% 65.3%
5e53A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.68 38.0 4.25e-01 85.1% 69.9%
1n26A03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.68 39.0 4.14e-01 86.8% 64.4%
4lsdF00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.68 37.0 4.07e-01 85.1% 65.3%
4n68A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.67 38.0 4.14e-01 86.8% 66.7%
4gs7C02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.67 38.0 4.20e-01 84.3% 68.4%
2kvoA01 2.40.30.220 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Photosystem II Psb28 0.67 46.0 4.91e-01 95.0% 81.7%
2ee2A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.67 37.0 4.28e-01 85.1% 74.7%
5j11C02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.67 40.0 4.45e-01 98.3% 74.5%
4p02A03 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.66 47.0 4.71e-01 97.5% 72.1%
7u7nA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.66 38.0 4.19e-01 85.1% 70.1%
2w4oA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.64 32.0 3.98e-01 93.4% 75.3%
1bquA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 38.0 3.97e-01 87.6% 65.7%
4nn5C02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 38.0 4.12e-01 98.3% 72.7%
3cb0D00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.62 56.0 5.08e-01 96.7% 76.4%
2qckA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.62 56.0 5.17e-01 96.7% 78.1%
1f6fB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 34.0 3.75e-01 86.0% 64.9%
4l82A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.62 56.0 5.10e-01 96.7% 76.9%
2d37A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.61 55.0 5.04e-01 96.7% 76.1%
3bnkA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.61 55.0 4.71e-01 96.7% 66.7%
2ecuA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.60 52.0 4.85e-01 98.3% 75.8%
1rz1A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.60 54.0 4.99e-01 96.7% 77.0%
5choF00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.60 54.0 4.88e-01 96.7% 76.9%
8ct0B01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.60 54.0 4.80e-01 96.7% 73.5%
6se8A04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 39.0 4.17e-01 83.5% 75.0%
1uscA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.59 53.0 4.66e-01 96.7% 68.0%
2r6vA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.59 53.0 4.80e-01 96.7% 75.0%
4f07E00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.59 52.0 4.89e-01 96.7% 77.9%
1e62A01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.59 43.0 4.24e-01 87.6% 71.9%
3nfwA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 52.0 4.55e-01 96.7% 67.0%
4x83A03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 32.0 3.53e-01 86.0% 64.7%
2ep6A01 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.57 39.0 3.96e-01 99.2% 69.7%
4bwpB01 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.56 37.0 2.96e-01 95.9% 32.8%
1tu1A00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.55 39.0 3.67e-01 72.7% 73.6%
1xhnA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 48.0 4.37e-01 99.2% 88.6%
5gxuB01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.54 33.0 3.37e-01 86.8% 59.8%
2k4qA00 4.10.410.40 Few Secondary Structures › Irregular › Factor Xa Inhibitor › 0.53 48.0 4.42e-01 100.0% 87.8%
3l9bA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.53 38.0 3.84e-01 99.2% 72.2%
2ibgA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 31.0 3.35e-01 87.6% 66.7%
2cm5A00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.52 40.0 3.86e-01 96.7% 69.2%
3lzqA00 2.60.40.2480 Mainly Beta › Sandwich › Immunoglobulin-like › Periplasmic metal-binding protein Tp34-type 0.52 39.0 3.57e-01 87.6% 59.9%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3949305 1.1.13.54 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tail_L 0.83 78.0 7.30e-01 100.0% 97.9%
3504737 1.1.13.54 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tail_L 0.83 77.0 7.34e-01 99.2% 98.6%
4602833 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.82 77.0 7.41e-01 99.2% 94.1%
3964308 1.1.13.37 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DUF2163 0.78 72.0 6.97e-01 98.3% 94.1%
4995815 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.78 62.0 6.15e-01 98.3% 80.0%
4988103 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.77 57.0 6.41e-01 95.9% 98.9%
3943172 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.72 56.0 6.08e-01 98.3% 99.0%
4957565 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.71 63.0 6.31e-01 95.0% 98.4%
4344991 1.1.5.35 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › YwpF 0.71 56.0 5.53e-01 98.3% 77.7%
3977382 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.71 53.0 5.91e-01 94.2% 100.0%
3059162 1.1.13.30 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › E217_GP41 0.71 65.0 6.48e-01 98.3% 98.4%
1178487 1.1.13.26 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › GpP-like_1st 0.69 52.0 5.77e-01 95.9% 97.9%
77 1.1.5.25 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.69 46.0 4.80e-01 96.7% 73.6%
4810019 1.1.13.57 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › PF30637 0.69 55.0 5.73e-01 95.9% 91.8%
5078836 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.66 52.0 5.48e-01 98.3% 93.6%
3976188 1.1.13.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tube 0.62 57.0 5.15e-01 100.0% 89.7%
164880 1.1.5.10 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.62 56.0 5.07e-01 96.7% 74.2%
3419970 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.60 46.0 4.09e-01 95.9% 56.6%
3176181 4252.1.1.5 ↗ beta barrels › AttH-like › AttH-like › AttH-like › Svf1 0.59 42.0 3.53e-01 72.7% 82.9%
5060254 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 38.0 3.96e-01 96.7% 73.9%
4060896 4252.1.1.5 ↗ beta barrels › AttH-like › AttH-like › AttH-like › Svf1 0.54 39.0 3.30e-01 75.2% 83.3%
184718 1.1.13.16 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_TTP_12 0.53 48.0 4.42e-01 100.0% 87.8%
3610629 71.1.1.0 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.53 38.0 3.32e-01 73.6% 94.2%
3614913 4210.1.1.0 ↗ a+b two layers › WGR domain › WGR domain › WGR domain 0.50 26.0 3.05e-01 94.2% 70.6%