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NC_013021.1__YP_003084164.1__PSS2_gp020__00020

Bact-Vir

NC_013021.1__YP_003084164.1__PSS2_gp020__00020

Identity

Accession:
NC_013021 ↗
Kingdom:
phage

Quality

90.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Cyanophage_PSS2

TaxID: 658401

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-73
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3rklA00 6.10.140.1640 Special › Helix non-globular › Helix Hairpins › 0.70 49.0 4.55e-01 76.6% 58.7%
6v04A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.69 47.0 3.77e-01 71.9% 59.8%
1ntcA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.67 42.0 3.70e-01 78.1% 44.0%
6mlyB02 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.56 38.0 2.48e-01 70.3% 32.7%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3463832 386.1.1.334 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › Utp11 0.77 63.0 4.91e-01 95.3% 43.1%
3670890 2005.1.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.71 48.0 3.81e-01 78.1% 34.1%
3655858 2005.1.1.3 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.70 49.0 3.74e-01 78.1% 31.0%
3450582 2005.1.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.68 48.0 3.86e-01 78.1% 36.9%
3325528 2005.1.1.3 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.65 46.0 3.45e-01 78.1% 28.8%
3305761 2005.1.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.65 46.0 3.52e-01 78.1% 31.6%
3827309 244.3.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU 0.53 36.0 3.23e-01 71.9% 74.4%