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NC_013021.1__YP_003084175.1__PSS2_gp031__00031
Bact-VirNC_013021.1__YP_003084175.1__PSS2_gp031__00031
Identity
- Accession:
- NC_013021 ↗
- Kingdom:
- phage
Quality
75.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 12-64
Domain cluster:
representative
CATH (41)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2gutA00 | 1.10.246.20 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Coactivator CBP, KIX domain | 0.81 | 65.0 | 5.68e-01 | 86.8% | 71.4% |
| 1ufzA01 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.72 | 54.0 | 5.33e-01 | 84.9% | 79.3% |
| 1umqA00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.69 | 43.0 | 4.16e-01 | 81.1% | 56.7% |
| 5zi7A03 | 1.10.390.10 | Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 | 0.68 | 57.0 | 4.21e-01 | 100.0% | 70.6% |
| 3kxaA02 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.67 | 50.0 | 4.78e-01 | 84.9% | 87.9% |
| 3bs3A00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.65 | 52.0 | 5.06e-01 | 90.6% | 98.3% |
| 2awiA01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.65 | 53.0 | 4.97e-01 | 92.5% | 89.6% |
| 3u3wA01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.65 | 53.0 | 4.90e-01 | 92.5% | 92.8% |
| 1br2A03 | 1.20.120.720 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain | 0.65 | 49.0 | 4.17e-01 | 84.9% | 54.7% |
| 2r1jL00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.65 | 51.0 | 4.83e-01 | 90.6% | 90.9% |
| 3zhiA00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.64 | 53.0 | 4.79e-01 | 92.5% | 98.6% |
| 1dw9A01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.64 | 49.0 | 4.25e-01 | 84.9% | 73.6% |
| 5yclA01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.64 | 51.0 | 4.81e-01 | 88.7% | 87.5% |
| 4i5lB01 | 1.10.238.230 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › | 0.64 | 46.0 | 3.82e-01 | 79.2% | 79.0% |
| 2kpjA01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.64 | 52.0 | 4.81e-01 | 92.5% | 91.4% |
| 2ebyA01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.64 | 52.0 | 4.61e-01 | 92.5% | 81.0% |
| 3i9v201 | 1.10.10.1590 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › NADH-quinone oxidoreductase subunit E | 0.63 | 47.0 | 4.34e-01 | 83.0% | 76.4% |
| 1neqA00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.63 | 50.0 | 4.58e-01 | 92.5% | 78.4% |
| 2ef8A00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.63 | 55.0 | 4.73e-01 | 100.0% | 88.1% |
| 5dicA00 | 1.10.238.20 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain | 0.62 | 47.0 | 3.79e-01 | 86.8% | 50.4% |
| 3c8tA01 | 1.10.275.10 | Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) | 0.62 | 52.0 | 4.42e-01 | 100.0% | 82.5% |
| 3kp1E02 | 1.10.8.1000 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ornithine 4,5 aminomutase S component, alpha subunit-like | 0.61 | 47.0 | 4.37e-01 | 86.8% | 74.3% |
| 1y7yA00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.61 | 52.0 | 4.81e-01 | 98.1% | 95.7% |
| 7ar7E01 | 1.10.10.1590 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › NADH-quinone oxidoreductase subunit E | 0.61 | 42.0 | 4.02e-01 | 73.6% | 85.7% |
| 6rnzA00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.61 | 49.0 | 4.60e-01 | 92.5% | 92.4% |
| 3nrvB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 40.0 | 3.09e-01 | 84.9% | 28.7% |
| 1lliA00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.60 | 52.0 | 4.46e-01 | 100.0% | 84.3% |
| 1wkbA01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.59 | 44.0 | 2.58e-01 | 81.1% | 42.9% |
| 1y9qA01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.58 | 49.0 | 4.26e-01 | 98.1% | 77.6% |
| 1y02A01 | 1.10.720.140 | Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › | 0.57 | 35.0 | 3.20e-01 | 79.2% | 41.0% |
| 6b9sB02 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.57 | 46.0 | 4.25e-01 | 94.3% | 84.9% |
| 2mgqA00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.57 | 42.0 | 3.99e-01 | 86.8% | 75.0% |
| 2lwdA00 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.56 | 45.0 | 3.90e-01 | 100.0% | 90.6% |
| 2w9zA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.55 | 45.0 | 3.51e-01 | 100.0% | 58.6% |
| 3nrkA01 | 1.10.4030.10 | Mainly Alpha › Orthogonal Bundle › Triger factor/SurA peptide-binding fold › Porin chaperone SurA, peptide-binding domain | 0.54 | 38.0 | 2.63e-01 | 98.1% | 18.8% |
| 2cxxA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.54 | 44.0 | 3.07e-01 | 94.3% | 34.8% |
| 7t2rC01 | 1.10.10.1590 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › NADH-quinone oxidoreductase subunit E | 0.54 | 41.0 | 4.02e-01 | 81.1% | 75.4% |
| 2vsgA02 | 1.10.470.10 | Mainly Alpha › Orthogonal Bundle › Variant Surface Glycoprotein, subunit A; domain 2 › Variant Surface Glycoprotein, subunit A, domain 2 | 0.53 | 45.0 | 3.33e-01 | 100.0% | 71.2% |
| 2qwwC00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 39.0 | 2.90e-01 | 81.1% | 37.7% |
| 1g3nC01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.52 | 43.0 | 3.46e-01 | 100.0% | 58.3% |
| 3mfiA03 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.52 | 41.0 | 3.74e-01 | 94.3% | 93.4% |
ECOD (44)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3856670 | 103.1.1.2 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › CUE | 0.76 | 59.0 | 6.06e-01 | 86.8% | 90.0% |
| 3959880 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.75 | 55.0 | 4.65e-01 | 79.2% | 46.7% |
| 1388536 | 2006.1.1.18 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 | 0.74 | 64.0 | 4.24e-01 | 100.0% | 25.0% |
| 4932829 | 4016.1.1.1 ↗ | alpha bundles › alpha-helical domain in type II DNA topoisomerase › alpha-helical domain in type II DNA topoisomerase › alpha-helical domain in type II DNA topoisomerase › DNA_topoisoIV | 0.72 | 53.0 | 3.87e-01 | 79.2% | 29.0% |
| 3345589 | 4016.1.1.1 ↗ | alpha bundles › alpha-helical domain in type II DNA topoisomerase › alpha-helical domain in type II DNA topoisomerase › alpha-helical domain in type II DNA topoisomerase › DNA_topoisoIV | 0.72 | 55.0 | 3.74e-01 | 83.0% | 23.7% |
| 4218225 | 4016.1.1.1 ↗ | alpha bundles › alpha-helical domain in type II DNA topoisomerase › alpha-helical domain in type II DNA topoisomerase › alpha-helical domain in type II DNA topoisomerase › DNA_topoisoIV | 0.72 | 53.0 | 3.79e-01 | 79.2% | 27.1% |
| 4023314 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.71 | 54.0 | 5.42e-01 | 86.8% | 89.1% |
| 4928641 | 101.1.2.70 ↗ | alpha arrays › HTH › HTH › winged helix domain › PqqD | 0.71 | 48.0 | 4.29e-01 | 73.6% | 49.3% |
| 4299749 | 4016.1.1.1 ↗ | alpha bundles › alpha-helical domain in type II DNA topoisomerase › alpha-helical domain in type II DNA topoisomerase › alpha-helical domain in type II DNA topoisomerase › DNA_topoisoIV | 0.70 | 53.0 | 3.90e-01 | 83.0% | 30.3% |
| 4946213 | 4016.1.1.18 ↗ | alpha bundles › alpha-helical domain in type II DNA topoisomerase › alpha-helical domain in type II DNA topoisomerase › alpha-helical domain in type II DNA topoisomerase › DNA_gyraseA_C | 0.70 | 54.0 | 3.91e-01 | 83.0% | 31.0% |
| 4373100 | 4016.1.1.1 ↗ | alpha bundles › alpha-helical domain in type II DNA topoisomerase › alpha-helical domain in type II DNA topoisomerase › alpha-helical domain in type II DNA topoisomerase › DNA_topoisoIV | 0.70 | 53.0 | 3.89e-01 | 83.0% | 30.3% |
| 4949368 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.68 | 50.0 | 4.93e-01 | 77.4% | 78.2% |
| 4619147 | 613.1.1.1 ↗ | alpha complex topology › Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) › Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) › Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) › tRNA-synt_2c | 0.68 | 53.0 | 3.48e-01 | 84.9% | 20.9% |
| 4972111 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.67 | 50.0 | 4.01e-01 | 86.8% | 42.0% |
| 3947329 | 101.1.4.3 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 | 0.67 | 54.0 | 5.09e-01 | 90.6% | 90.8% |
| 4632225 | 101.1.4.27 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › CYNS_N | 0.66 | 52.0 | 4.49e-01 | 86.8% | 75.3% |
| 4537353 | 101.1.4.3 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 | 0.66 | 53.0 | 4.07e-01 | 90.6% | 48.0% |
| 317430 | 101.1.4.3 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 | 0.66 | 53.0 | 4.96e-01 | 90.6% | 91.0% |
| 3974079 | 101.1.4.3 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 | 0.66 | 53.0 | 4.29e-01 | 90.6% | 57.1% |
| 3969553 | 101.1.4.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like | 0.66 | 53.0 | 4.76e-01 | 90.6% | 80.0% |
| 4952242 | 101.1.4.17 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_26 | 0.66 | 53.0 | 4.88e-01 | 90.6% | 85.7% |
| 5083592 | 101.1.4.18 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_31 | 0.66 | 51.0 | 4.79e-01 | 84.9% | 87.7% |
| 3972189 | 101.1.4.3 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 | 0.65 | 52.0 | 4.71e-01 | 90.6% | 80.0% |
| 3603382 | 159.1.2.0 ↗ | alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related | 0.65 | 55.0 | 3.87e-01 | 98.1% | 96.8% |
| 3230818 | 101.1.1.1 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain | 0.65 | 45.0 | 3.99e-01 | 73.6% | 69.3% |
| 5003089 | 101.1.4.3 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 | 0.64 | 51.0 | 4.70e-01 | 90.6% | 85.7% |
| 4189523 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.63 | 46.0 | 4.90e-01 | 81.1% | 91.1% |
| 3942057 | 101.1.4.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like | 0.63 | 51.0 | 5.09e-01 | 96.2% | 90.9% |
| 3277880 | 101.1.4.3 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 | 0.62 | 53.0 | 4.79e-01 | 98.1% | 85.3% |
| 3957550 | 101.1.4.3 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 | 0.62 | 49.0 | 4.57e-01 | 90.6% | 85.7% |
| 4062632 | 304.41.1.1 ↗ | a+b two layers › Alpha-beta plaits › Glutamyl tRNA-reductase catalytic, N-terminal domain › Glutamyl tRNA-reductase catalytic, N-terminal domain › GlutR_N | 0.62 | 53.0 | 3.82e-01 | 98.1% | 55.0% |
| 4494528 | 632.2.1.40 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › DUF515 | 0.62 | 46.0 | 4.61e-01 | 86.8% | 90.9% |
| 3930817 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.61 | 49.0 | 3.61e-01 | 86.8% | 34.8% |
| 3967226 | 101.1.4.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like | 0.61 | 49.0 | 4.51e-01 | 90.6% | 84.3% |
| 5030212 | 101.1.4.3 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 | 0.61 | 51.0 | 4.72e-01 | 96.2% | 95.7% |
| 3280943 | 101.1.4.18 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_31 | 0.61 | 51.0 | 4.84e-01 | 98.1% | 98.5% |
| 3707222 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.61 | 44.0 | 4.38e-01 | 77.4% | 76.4% |
| 3978391 | 101.1.4.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like | 0.59 | 49.0 | 4.61e-01 | 98.1% | 91.4% |
| 3944622 | 101.1.4.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like | 0.57 | 41.0 | 3.73e-01 | 100.0% | 53.8% |
| 3625029 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.55 | 46.0 | 3.83e-01 | 100.0% | 58.1% |
| 3620216 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.55 | 45.0 | 4.00e-01 | 100.0% | 71.8% |
| 2881541 | 3697.1.1.1 ↗ | alpha bundles › NQO2 helical bundle domain › NQO2 helical bundle domain › NQO2 helical bundle domain › 2Fe-2S_thioredx | 0.55 | 42.0 | 3.87e-01 | 81.1% | 65.2% |
| 3281471 | 101.1.1.42 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 | 0.54 | 40.0 | 3.63e-01 | 84.9% | 66.3% |
| 5027752 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.52 | 43.0 | 3.91e-01 | 100.0% | 73.8% |