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NC_013021.1__YP_003084186.1__PSS2_gp042__00042
Bact-VirNC_013021.1__YP_003084186.1__PSS2_gp042__00042
Identity
- Accession:
- NC_013021 ↗
- Kingdom:
- phage
Quality
86.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-77
Domain cluster:
representative
CATH (31)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2f4lA03 | 3.10.28.20 | Alpha Beta › Roll › Endonuclease I-creI › Acetamidase/Formamidase-like domains | 0.73 | 51.0 | 4.98e-01 | 72.6% | 86.3% |
| 1oaiA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.68 | 46.0 | 5.08e-01 | 76.7% | 86.4% |
| 2l2dA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.65 | 43.0 | 4.36e-01 | 74.0% | 68.5% |
| 4b43A01 | 1.10.10.2480 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.65 | 53.0 | 5.49e-01 | 100.0% | 97.1% |
| 2l4eA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.63 | 41.0 | 4.58e-01 | 71.2% | 86.0% |
| 2zhgA00 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.63 | 54.0 | 4.55e-01 | 94.5% | 69.4% |
| 4ae4A00 | 1.20.120.1920 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › UBAP1 SOUBA domain | 0.62 | 49.0 | 4.21e-01 | 84.9% | 64.9% |
| 3umoA00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.62 | 46.0 | 3.02e-01 | 79.5% | 88.3% |
| 2drpA01 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.60 | 28.0 | 3.63e-01 | 84.9% | 85.3% |
| 2phnA02 | 3.90.1660.10 | Alpha Beta › Alpha-Beta Complex › CofE-like fold › CofE-like domain | 0.60 | 45.0 | 4.12e-01 | 80.8% | 62.4% |
| 3gpvA00 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.58 | 49.0 | 4.22e-01 | 91.8% | 67.3% |
| 1d0xA04 | 1.20.120.720 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain | 0.58 | 53.0 | 4.24e-01 | 100.0% | 55.5% |
| 5i41B00 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.58 | 43.0 | 4.44e-01 | 90.4% | 89.6% |
| 1r8eA02 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.58 | 44.0 | 4.42e-01 | 90.4% | 83.6% |
| 4oseB00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.57 | 49.0 | 3.36e-01 | 98.6% | 44.4% |
| 3u21A00 | 1.10.10.2430 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › NFRKB winged helix-like domain | 0.57 | 42.0 | 3.77e-01 | 80.8% | 95.4% |
| 1qviA01 | 1.20.120.720 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain | 0.57 | 52.0 | 4.44e-01 | 100.0% | 67.8% |
| 4k22B01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.57 | 46.0 | 3.27e-01 | 91.8% | 95.1% |
| 1iv8A03 | 1.10.150.200 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Maltooligosyl trehalose synthase; domain 3 | 0.57 | 35.0 | 3.43e-01 | 72.6% | 54.1% |
| 3ie7A00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.57 | 45.0 | 2.96e-01 | 86.3% | 87.4% |
| 3p2mA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.56 | 46.0 | 3.13e-01 | 91.8% | 41.6% |
| 3qaoA00 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.56 | 48.0 | 3.94e-01 | 100.0% | 100.0% |
| 3ljcA02 | 1.20.58.1480 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.54 | 48.0 | 4.00e-01 | 98.6% | 76.2% |
| 2rsiA02 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.54 | 25.0 | 3.30e-01 | 90.4% | 100.0% |
| 4lrjA02 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.53 | 36.0 | 3.45e-01 | 71.2% | 69.0% |
| 1lnwF01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 41.0 | 3.46e-01 | 83.6% | 60.5% |
| 3cdhA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 43.0 | 3.47e-01 | 87.7% | 59.7% |
| 1xjuA00 | 1.10.530.40 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.51 | 38.0 | 3.15e-01 | 84.9% | 66.7% |
| 3ccgA00 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.51 | 42.0 | 3.17e-01 | 91.8% | 71.4% |
| 2hpiA03 | 1.10.10.1600 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Bacterial DNA polymerase III alpha subunit, thumb domain | 0.50 | 34.0 | 3.45e-01 | 74.0% | 71.8% |
| 2a5yC03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 37.0 | 3.28e-01 | 84.9% | 53.2% |
ECOD (45)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3237750 | 101.1.2.303 ↗ | alpha arrays › HTH › HTH › winged helix domain › RPC5 | 0.74 | 34.0 | 3.20e-01 | 80.8% | 36.7% |
| 4032105 | 1166.1.1.1 ↗ | alpha arrays › Potassium-transporting ATPase KdpC subunit › Potassium-transporting ATPase KdpC subunit › Potassium-transporting ATPase KdpC subunit › KdpC | 0.74 | 54.0 | 3.95e-01 | 80.8% | 31.1% |
| 4335388 | 1166.1.1.1 ↗ | alpha arrays › Potassium-transporting ATPase KdpC subunit › Potassium-transporting ATPase KdpC subunit › Potassium-transporting ATPase KdpC subunit › KdpC | 0.71 | 52.0 | 3.88e-01 | 82.2% | 32.0% |
| 4093685 | 1166.1.1.1 ↗ | alpha arrays › Potassium-transporting ATPase KdpC subunit › Potassium-transporting ATPase KdpC subunit › Potassium-transporting ATPase KdpC subunit › KdpC | 0.71 | 58.0 | 4.18e-01 | 87.7% | 33.2% |
| 4449126 | 1166.1.1.1 ↗ | alpha arrays › Potassium-transporting ATPase KdpC subunit › Potassium-transporting ATPase KdpC subunit › Potassium-transporting ATPase KdpC subunit › KdpC | 0.68 | 53.0 | 3.72e-01 | 82.2% | 27.9% |
| 2701215 | 1166.1.1.1 ↗ | alpha arrays › Potassium-transporting ATPase KdpC subunit › Potassium-transporting ATPase KdpC subunit › Potassium-transporting ATPase KdpC subunit › KdpC | 0.68 | 52.0 | 3.81e-01 | 82.2% | 31.6% |
| 4666975 | 1166.1.1.0 ↗ | alpha arrays › Potassium-transporting ATPase KdpC subunit › Potassium-transporting ATPase KdpC subunit › Potassium-transporting ATPase KdpC subunit | 0.68 | 51.0 | 3.70e-01 | 79.5% | 30.5% |
| 4090700 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.67 | 53.0 | 5.00e-01 | 86.3% | 70.0% |
| 4191032 | 101.1.9.16 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 | 0.66 | 44.0 | 5.04e-01 | 80.8% | 100.0% |
| 3730487 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.65 | 39.0 | 3.09e-01 | 91.8% | 30.3% |
| 3781059 | 108.1.1.26 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5 | 0.63 | 53.0 | 4.67e-01 | 94.5% | 66.4% |
| 3410018 | 603.1.1.104 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › 7tm_7 | 0.62 | 43.0 | 2.75e-01 | 72.6% | 48.3% |
| 4582078 | 181.1.1.0 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins | 0.62 | 41.0 | 4.74e-01 | 71.2% | 100.0% |
| 3926959 | 605.6.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › HP1531-like › HP1531-like | 0.61 | 43.0 | 4.13e-01 | 89.0% | 63.5% |
| 3614888 | 192.8.1.0 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain | 0.60 | 50.0 | 4.42e-01 | 90.4% | 95.2% |
| 3302473 | 2004.1.1.17 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Myosin_head | 0.60 | 53.0 | 3.56e-01 | 95.9% | 41.4% |
| 3608910 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.59 | 45.0 | 3.86e-01 | 83.6% | 53.3% |
| 3589664 | 101.1.2.1 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_1 | 0.59 | 44.0 | 4.16e-01 | 78.1% | 87.1% |
| 3898819 | 2004.1.1.17 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Myosin_head | 0.59 | 54.0 | 3.20e-01 | 100.0% | 15.6% |
| 5040762 | 4095.1.1.1 ↗ | alpha bundles › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › DNA_ligase_A_N | 0.59 | 38.0 | 3.44e-01 | 74.0% | 46.7% |
| 3285265 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.58 | 41.0 | 2.90e-01 | 74.0% | 29.2% |
| 3658440 | 386.1.1.26 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_6 | 0.58 | 35.0 | 3.85e-01 | 97.3% | 76.4% |
| 3783147 | 101.1.2.212 ↗ | alpha arrays › HTH › HTH › winged helix domain › Cac1_C | 0.58 | 41.0 | 4.19e-01 | 74.0% | 81.4% |
| 3466067 | 3238.1.1.1 ↗ | alpha superhelices › Mitochondrial mTERF-like › Mitochondrial mTERF › Mitochondrial mTERF › mTERF | 0.57 | 39.0 | 2.76e-01 | 71.2% | 24.9% |
| 3645693 | 101.1.2.516 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF25895 | 0.57 | 44.0 | 3.98e-01 | 83.6% | 93.0% |
| 3686341 | 2004.1.1.17 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Myosin_head | 0.57 | 50.0 | 2.86e-01 | 100.0% | 9.9% |
| 3479755 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.57 | 52.0 | 3.10e-01 | 100.0% | 16.2% |
| 5022765 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 40.0 | 4.10e-01 | 76.7% | 78.6% |
| 3176105 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.56 | 49.0 | 3.31e-01 | 100.0% | 69.3% |
| 3290892 | 101.1.9.17 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 | 0.56 | 48.0 | 4.32e-01 | 100.0% | 84.8% |
| 3391248 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.55 | 50.0 | 4.25e-01 | 98.6% | 74.8% |
| 5039498 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.54 | 39.0 | 2.89e-01 | 78.1% | 44.7% |
| 3238992 | 2004.1.1.414 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU, MMR_HSR1 | 0.54 | 46.0 | 2.91e-01 | 90.4% | 45.8% |
| 3498926 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.53 | 26.0 | 3.48e-01 | 80.8% | 97.1% |
| 3263296 | 7516.1.1.35 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Branch | 0.52 | 42.0 | 2.71e-01 | 89.0% | 28.7% |
| 3341306 | 101.1.1.121 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 | 0.52 | 43.0 | 3.59e-01 | 89.0% | 52.0% |
| 3584535 | 5051.1.1.6 ↗ | alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Aa_trans | 0.52 | 44.0 | 2.83e-01 | 97.3% | 79.8% |
| 3259230 | 101.1.2.88 ↗ | alpha arrays › HTH › HTH › winged helix domain › Dimerisation | 0.52 | 29.0 | 2.60e-01 | 75.3% | 39.0% |
| 3587301 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 36.0 | 3.83e-01 | 78.1% | 83.1% |
| 3720489 | 101.1.2.167 ↗ | alpha arrays › HTH › HTH › winged helix domain › XRN1_D2_D3 | 0.51 | 43.0 | 3.63e-01 | 100.0% | 77.8% |
| 3506957 | 2004.1.1.14 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU | 0.51 | 43.0 | 2.69e-01 | 90.4% | 42.5% |
| 3267186 | 4203.1.1.1 ↗ | few secondary structure elements › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 | 0.51 | 44.0 | 4.16e-01 | 93.2% | 82.4% |
| 3961073 | 149.1.1.1 ↗ | alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 | 0.51 | 40.0 | 2.60e-01 | 91.8% | 68.5% |
| 5042767 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 37.0 | 3.40e-01 | 78.1% | 75.5% |
| 4285736 | 2004.1.1.14 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU | 0.50 | 41.0 | 2.66e-01 | 94.5% | 31.1% |