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NC_013021.1__YP_003084201.1__PSS2_gp057__00057
Bact-VirNC_013021.1__YP_003084201.1__PSS2_gp057__00057
Identity
- Accession:
- NC_013021 ↗
- Kingdom:
- phage
Quality
72.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 13-54
Domain cluster:
representative
CATH (44)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4ojuA00 | 3.80.10.10 | Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor | 0.75 | 52.0 | 3.57e-01 | 73.8% | 52.8% |
| 4o2wD00 | 2.130.10.30 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II | 0.70 | 57.0 | 3.42e-01 | 100.0% | 23.9% |
| 4bjzA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.70 | 54.0 | 3.61e-01 | 85.7% | 37.5% |
| 3awiA02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.70 | 50.0 | 3.12e-01 | 81.0% | 51.4% |
| 4immA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.69 | 57.0 | 3.40e-01 | 100.0% | 18.7% |
| 3nvnA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.69 | 53.0 | 3.12e-01 | 90.5% | 19.3% |
| 1gv4A02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.68 | 52.0 | 3.51e-01 | 85.7% | 75.9% |
| 4hdjA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.68 | 56.0 | 3.34e-01 | 100.0% | 16.9% |
| 3c6kA02 | 2.30.140.10 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain | 0.68 | 53.0 | 5.05e-01 | 100.0% | 94.6% |
| 6my0A02 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.68 | 50.0 | 4.48e-01 | 85.7% | 60.0% |
| 4a53A01 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.68 | 51.0 | 4.70e-01 | 90.5% | 67.7% |
| 4x9cD00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.67 | 51.0 | 4.73e-01 | 90.5% | 65.0% |
| 2ra9A02 | 2.30.270.10 | Mainly Beta › Roll › duf1285 protein fold › duf1285 protein | 0.67 | 49.0 | 4.10e-01 | 78.6% | 71.2% |
| 2ymsC00 | 2.40.10.480 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.67 | 55.0 | 4.73e-01 | 100.0% | 82.7% |
| 4pdyA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.67 | 55.0 | 4.30e-01 | 97.6% | 87.9% |
| 2xdoD00 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.67 | 50.0 | 2.95e-01 | 83.3% | 39.0% |
| 3rp7A01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.67 | 48.0 | 3.29e-01 | 81.0% | 38.1% |
| 2vouB01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.66 | 49.0 | 3.08e-01 | 83.3% | 47.5% |
| 2ymsA00 | 2.40.128.630 | Mainly Beta › Beta Barrel › Lipocalin › | 0.66 | 52.0 | 3.93e-01 | 100.0% | 50.8% |
| 2xk0A00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.66 | 48.0 | 4.26e-01 | 85.7% | 52.2% |
| 2k57A00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.65 | 49.0 | 4.63e-01 | 90.5% | 76.4% |
| 6g6qA01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.65 | 52.0 | 3.75e-01 | 100.0% | 43.8% |
| 3d1cA02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.64 | 47.0 | 3.60e-01 | 85.7% | 91.2% |
| 6bogA02 | 2.30.30.930 | Mainly Beta › Roll › SH3 type barrels. › | 0.64 | 47.0 | 4.43e-01 | 90.5% | 73.3% |
| 2n1hA00 | 2.70.130.10 | Mainly Beta › Distorted Sandwich › Cation-dependent Mannose-6-phosphate Receptor; Chain A › Mannose-6-phosphate receptor binding domain | 0.63 | 43.0 | 3.48e-01 | 76.2% | 60.6% |
| 8ajjA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.62 | 47.0 | 3.53e-01 | 85.7% | 93.0% |
| 2m3xC02 | 2.40.10.360 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.62 | 49.0 | 4.33e-01 | 95.2% | 58.0% |
| 4ml0B00 | 3.30.2310.20 | Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like | 0.62 | 47.0 | 3.85e-01 | 90.5% | 53.3% |
| 7cfdA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.62 | 46.0 | 4.01e-01 | 85.7% | 50.7% |
| 2ogqA01 | 3.30.1120.30 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain | 0.62 | 45.0 | 3.32e-01 | 81.0% | 31.7% |
| 2hbpA00 | 2.30.30.700 | Mainly Beta › Roll › SH3 type barrels. › SLA1 homology domain 1 | 0.62 | 45.0 | 4.10e-01 | 85.7% | 56.1% |
| 3pnnA00 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.61 | 45.0 | 2.79e-01 | 85.7% | 13.6% |
| 2f5kA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.61 | 45.0 | 4.41e-01 | 90.5% | 92.0% |
| 3c12A01 | 2.30.30.910 | Mainly Beta › Roll › SH3 type barrels. › | 0.59 | 49.0 | 4.61e-01 | 92.9% | 74.5% |
| 2x3hA00 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.59 | 41.0 | 2.34e-01 | 97.6% | 6.2% |
| 2wmmA02 | 3.30.70.3500 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › MukB, hinge domain | 0.59 | 44.0 | 3.30e-01 | 83.3% | 60.2% |
| 2p12A01 | 2.40.380.10 | Mainly Beta › Beta Barrel › FomD barrel-like fold › FomD-like | 0.58 | 46.0 | 3.29e-01 | 100.0% | 32.3% |
| 2ig6A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.57 | 43.0 | 3.09e-01 | 88.1% | 70.6% |
| 4gt6A00 | 3.80.10.10 | Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor | 0.57 | 46.0 | 2.74e-01 | 97.6% | 21.9% |
| 4rs6A01 | 3.30.1120.30 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain | 0.57 | 42.0 | 3.22e-01 | 85.7% | 55.9% |
| 3na2A00 | 3.40.1570.20 | Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › | 0.56 | 43.0 | 3.11e-01 | 90.5% | 60.1% |
| 3n8hA02 | 3.30.1300.10 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › Pantoate-beta-alanine ligase, C-terminal domain | 0.55 | 37.0 | 3.23e-01 | 73.8% | 98.7% |
| 1df0A02 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.54 | 45.0 | 3.58e-01 | 100.0% | 68.5% |
| 2dyiA01 | 2.40.30.60 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › RimM | 0.53 | 40.0 | 3.38e-01 | 90.5% | 50.0% |
ECOD (54)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3663352 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.86 | 60.0 | 5.29e-01 | 73.8% | 55.0% |
| 4998113 | 4.1.1.28 ↗ | beta barrels › SH3 › SH3 › SH3 › BPL_C | 0.74 | 56.0 | 5.57e-01 | 85.7% | 82.2% |
| 3229399 | 5.1.5.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed | 0.72 | 61.0 | 3.62e-01 | 100.0% | 16.7% |
| 3204250 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.72 | 60.0 | 3.69e-01 | 100.0% | 34.4% |
| 4167925 | 5.1.4.309 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, PF29630 | 0.71 | 60.0 | 3.55e-01 | 100.0% | 18.2% |
| 5055079 | 56.2.1.1 ↗ | beta sandwiches › Epsilon subunit of F1F0-ATP synthase-N › CO dehydrogenase accessory protein CooT › CO dehydrogenase accessory protein CooT › CooT | 0.71 | 55.0 | 5.00e-01 | 88.1% | 70.0% |
| 3878170 | 5.1.4.549 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF28327 | 0.71 | 58.0 | 3.52e-01 | 100.0% | 31.7% |
| 4992068 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.70 | 58.0 | 3.60e-01 | 100.0% | 19.3% |
| 3602921 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.70 | 55.0 | 5.16e-01 | 90.5% | 70.9% |
| 3946297 | 4.1.1.111 ↗ | beta barrels › SH3 › SH3 › SH3 › Tudor_RapA | 0.70 | 55.0 | 4.78e-01 | 90.5% | 62.9% |
| 3518934 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.70 | 60.0 | 3.58e-01 | 100.0% | 21.3% |
| 3172580 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.70 | 60.0 | 3.48e-01 | 100.0% | 17.7% |
| 4302938 | 292.2.1.0 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain | 0.70 | 49.0 | 3.93e-01 | 76.2% | 76.5% |
| None | — | 0.70 | 57.0 | 3.46e-01 | 100.0% | 27.4% | |
| 3079511 | 5.1.5.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 | 0.69 | 58.0 | 3.46e-01 | 100.0% | 20.1% |
| 3616717 | 5.1.4.407 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RCC1, RCC1_2, Alsin_RLD | 0.69 | 57.0 | 3.31e-01 | 100.0% | 23.1% |
| 3687323 | 5.1.10.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed | 0.69 | 46.0 | 4.03e-01 | 71.4% | 44.6% |
| 2165969 | 5.1.5.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 | 0.69 | 58.0 | 3.47e-01 | 100.0% | 17.9% |
| 3617004 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.69 | 55.0 | 4.11e-01 | 92.9% | 58.3% |
| 5043979 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.69 | 56.0 | 4.74e-01 | 90.5% | 81.4% |
| 4168653 | 4.1.1.111 ↗ | beta barrels › SH3 › SH3 › SH3 › Tudor_RapA | 0.69 | 55.0 | 5.20e-01 | 90.5% | 86.0% |
| 4284709 | 4.1.1.111 ↗ | beta barrels › SH3 › SH3 › SH3 › Tudor_RapA | 0.68 | 54.0 | 5.00e-01 | 90.5% | 76.4% |
| 3557192 | 5.1.4.48 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › BBS1 | 0.68 | 58.0 | 3.40e-01 | 100.0% | 16.2% |
| 3582902 | 5.1.10.4 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed › SSL_N | 0.67 | 54.0 | 4.05e-01 | 100.0% | 60.0% |
| 4071917 | 4.1.1.111 ↗ | beta barrels › SH3 › SH3 › SH3 › Tudor_RapA | 0.67 | 51.0 | 4.96e-01 | 90.5% | 84.0% |
| 3404395 | 5.1.3.139 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Str_synth, SGL, SSL_N | 0.67 | 53.0 | 3.14e-01 | 97.6% | 10.4% |
| 3667367 | 5.1.3.4 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › WD40 | 0.66 | 53.0 | 3.33e-01 | 95.2% | 18.4% |
| 5062678 | 73.1.1.1 ↗ | beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › FHA | 0.66 | 54.0 | 4.02e-01 | 97.6% | 38.3% |
| 3230533 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.66 | 54.0 | 5.37e-01 | 92.9% | 88.9% |
| 4974669 | 4.1.1.458 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF2098 | 0.65 | 51.0 | 4.08e-01 | 88.1% | 57.8% |
| 3924279 | 5.1.3.139 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Str_synth, SGL, SSL_N | 0.64 | 55.0 | 3.22e-01 | 100.0% | 25.9% |
| 4938828 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.64 | 53.0 | 4.73e-01 | 92.9% | 78.3% |
| 4400642 | 4.1.1.257 ↗ | beta barrels › SH3 › SH3 › SH3 › Flag1_repress | 0.64 | 48.0 | 4.03e-01 | 90.5% | 47.1% |
| 4957888 | 4.1.1.458 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF2098 | 0.64 | 51.0 | 4.61e-01 | 90.5% | 71.7% |
| 5017637 | 4.1.1.458 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF2098 | 0.64 | 49.0 | 4.62e-01 | 90.5% | 94.5% |
| 3920121 | 5.1.4.281 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Hyd_WA, Tectonin | 0.64 | 52.0 | 3.26e-01 | 100.0% | 29.2% |
| 3838251 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.63 | 51.0 | 3.16e-01 | 100.0% | 47.2% |
| 4076879 | 4.1.1.87 ↗ | beta barrels › SH3 › SH3 › SH3 › FLgD_tudor | 0.62 | 50.0 | 4.74e-01 | 90.5% | 78.0% |
| 2141157 | 59.1.1.4 ↗ | beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like › Ctf8 | 0.61 | 50.0 | 3.66e-01 | 100.0% | 76.5% |
| 4658510 | 375.14.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) | 0.61 | 43.0 | 4.41e-01 | 83.3% | 85.0% |
| 4481026 | 4.1.1.407 ↗ | beta barrels › SH3 › SH3 › SH3 › PF29661 | 0.60 | 48.0 | 4.36e-01 | 92.9% | 73.3% |
| 4110878 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.60 | 47.0 | 4.68e-01 | 88.1% | 91.1% |
| 4862202 | 4.1.1.33 ↗ | beta barrels › SH3 › SH3 › SH3 › Myosin_N | 0.60 | 44.0 | 4.30e-01 | 85.7% | 73.5% |
| 4975714 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.59 | 43.0 | 4.13e-01 | 85.7% | 65.5% |
| 4011292 | 74.1.1.0 ↗ | beta duplicates or obligate multimers › Transcription factor IIA (TFIIA), beta-barrel domain › Transcription factor IIA (TFIIA), beta-barrel domain › Transcription factor IIA (TFIIA), beta-barrel domain | 0.58 | 40.0 | 3.95e-01 | 73.8% | 100.0% |
| 3174977 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.58 | 43.0 | 3.55e-01 | 90.5% | 45.3% |
| 3682857 | 4.6.1.0 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain | 0.57 | 49.0 | 4.35e-01 | 100.0% | 95.2% |
| 140040 | 4216.1.1.3 ↗ | a+b duplicates or obligate multimers › Heme iron utilization protein-like › Heme iron utilization protein-like › Heme iron utilization protein-like › LFE_1968-like | 0.56 | 43.0 | 3.11e-01 | 90.5% | 60.1% |
| 3879757 | 391.1.2.2 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › PSP94 | 0.54 | 39.0 | 3.13e-01 | 95.2% | 36.7% |
| 4161357 | 375.14.2.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) › Rubredoxin-like domain in leucyl-tRNA synthetase (LS2) | 0.53 | 37.0 | 3.74e-01 | 85.7% | 82.5% |
| 3541603 | 386.1.1.106 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-FCS | 0.53 | 40.0 | 3.96e-01 | 100.0% | 84.4% |
| 4140141 | 375.14.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) | 0.52 | 37.0 | 3.79e-01 | 85.7% | 80.0% |
| 3801570 | 391.1.1.7 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › Fn1_2 | 0.51 | 41.0 | 4.06e-01 | 92.9% | 86.7% |
| 3517193 | 391.1.1.7 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › Fn1_2 | 0.51 | 39.0 | 3.06e-01 | 88.1% | 58.0% |