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NC_013021.1__YP_003084214.1__PSS2_gp070__00070

Bact-Vir

Identity

Accession:: NC_013021 ↗
Kingdom:: phage

Quality

88.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Cyanophage_PSS2

TaxID: 658401

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 11-86

PDB

Domain cluster: representative

CATH (9)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5ucoA02	3.40.47.10	Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase	0.64	33.0	2.66e-01	76.3%	22.9%
2zdiB00	1.10.287.370	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.64	48.0	4.32e-01	80.3%	59.4%
1fxkB00	1.10.287.370	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.63	47.0	4.19e-01	80.3%	57.8%
3ak5D02	2.160.20.20	Mainly Beta › 3 Solenoid › Pectate Lyase C-like ›	0.59	50.0	2.98e-01	100.0%	56.6%
3aeiA00	1.10.287.370	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.58	40.0	3.78e-01	73.7%	58.5%
3euoA02	3.40.47.10	Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase	0.57	31.0	2.48e-01	81.6%	24.8%
4mbsA00	1.20.1070.10	Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins	0.53	40.0	2.59e-01	80.3%	63.6%
4g41A00	3.40.50.1580	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain	0.53	29.0	2.06e-01	75.0%	16.1%
6heiA01	3.90.70.10	Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases	0.52	42.0	2.70e-01	85.5%	63.7%

ECOD (13)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4618205	604.1.1.150 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › PF28954	0.72	50.0	4.29e-01	72.4%	48.3%
3415741	192.2.1.0 ↗	alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin	0.66	49.0	3.95e-01	78.9%	57.9%
4937431	192.2.1.0 ↗	alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin	0.63	55.0	4.35e-01	100.0%	58.8%
5051446	3755.3.1.0 ↗	alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin	0.61	53.0	4.39e-01	100.0%	65.0%
3386489	4121.1.1.0 ↗	a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like	0.59	47.0	3.63e-01	86.8%	100.0%
4956663	3291.1.1.49 ↗	alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › NFACT_N	0.58	43.0	3.68e-01	80.3%	76.8%
5045441	192.2.1.88 ↗	alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › NFACT_N	0.57	52.0	3.99e-01	100.0%	50.0%
4177935	192.8.1.0 ↗	alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain	0.57	48.0	4.15e-01	90.8%	60.0%
5044090	3755.3.1.0 ↗	alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin	0.56	51.0	3.94e-01	100.0%	62.5%
4026701	180.1.1.1 ↗	alpha bundles › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › PAP2	0.55	40.0	3.05e-01	80.3%	87.5%
3523657	5.1.4.18 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › EPTP	0.52	42.0	2.63e-01	86.8%	49.0%
3626345	220.1.1.0 ↗	beta barrels › PH domain-like › PH domain-like › PH domain-like	0.51	43.0	3.75e-01	89.5%	71.8%
3252862	101.1.1.0 ↗	alpha arrays › HTH › HTH › Three-helical HTH	0.51	37.0	3.32e-01	77.6%	89.1%