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NC_013021.1__YP_003084232.1__X__00088
Bact-VirNC_013021.1__YP_003084232.1__X__00088
Identity
- Accession:
- NC_013021 ↗
- Kingdom:
- phage
Quality
53.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 44-130
Domain cluster:
rep: IMGVR_UViG_3300004460_001850-3300004460-Ga0066222_10089863__D1067-1140
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ok7A01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.59 | 45.0 | 4.20e-01 | 83.9% | 73.2% |
| 1cqxA02 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.57 | 44.0 | 4.12e-01 | 83.9% | 79.3% |
| 4b3fX02 | 2.40.30.270 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.57 | 43.0 | 4.18e-01 | 81.6% | 79.6% |
| 2xzlA02 | 2.40.30.230 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.57 | 43.0 | 4.46e-01 | 81.6% | 91.1% |
| 2n1kA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 43.0 | 4.11e-01 | 100.0% | 70.8% |
| 3zpeA00 | 2.60.90.50 | Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › | 0.55 | 41.0 | 3.65e-01 | 83.9% | 52.2% |
| 2ekjA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 43.0 | 4.13e-01 | 100.0% | 74.3% |
| 1yloE02 | 2.40.30.40 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 | 0.55 | 41.0 | 4.15e-01 | 81.6% | 88.1% |
| 3sy6A01 | 2.60.40.2620 | Mainly Beta › Sandwich › Immunoglobulin-like › Fimbrillin-like | 0.52 | 44.0 | 3.93e-01 | 100.0% | 86.6% |
| 4fzxC00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.51 | 37.0 | 3.06e-01 | 77.0% | 81.2% |
| 3t2lA01 | 2.60.40.2620 | Mainly Beta › Sandwich › Immunoglobulin-like › Fimbrillin-like | 0.50 | 42.0 | 3.78e-01 | 98.9% | 90.1% |
| 2wsuB02 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.50 | 41.0 | 3.62e-01 | 96.6% | 88.9% |
| 3i8tA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.50 | 42.0 | 3.70e-01 | 98.9% | 89.3% |
ECOD (34)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3266797 | 11.1.1.820 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Beta-sand_ComC_2nd | 0.62 | 48.0 | 4.70e-01 | 98.9% | 77.9% |
| 4332590 | 1.1.8.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C | 0.61 | 50.0 | 5.04e-01 | 100.0% | 94.1% |
| 4514238 | 1.1.8.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C | 0.61 | 50.0 | 5.23e-01 | 95.4% | 100.0% |
| 4497776 | 1.1.8.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C | 0.61 | 50.0 | 5.16e-01 | 98.9% | 98.8% |
| 4097656 | 1.1.8.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C | 0.61 | 50.0 | 4.89e-01 | 100.0% | 83.2% |
| 4130681 | 1.1.8.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C | 0.61 | 47.0 | 4.97e-01 | 100.0% | 100.0% |
| 4981624 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.60 | 52.0 | 4.90e-01 | 100.0% | 81.8% |
| 4398429 | 1.1.8.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C | 0.60 | 49.0 | 5.06e-01 | 98.9% | 100.0% |
| 4296283 | 1.1.8.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C | 0.60 | 50.0 | 5.06e-01 | 100.0% | 96.5% |
| 3251889 | 11.1.1.820 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Beta-sand_ComC_2nd | 0.60 | 45.0 | 4.62e-01 | 98.9% | 84.7% |
| 4200507 | 1.1.8.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C | 0.60 | 48.0 | 5.01e-01 | 95.4% | 98.8% |
| 4362502 | 1.1.8.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C | 0.60 | 48.0 | 5.03e-01 | 97.7% | 100.0% |
| 4308012 | 1.1.8.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C | 0.60 | 49.0 | 5.06e-01 | 97.7% | 98.8% |
| 4606097 | 1.1.8.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C | 0.59 | 50.0 | 5.08e-01 | 100.0% | 97.6% |
| 4301091 | 1.1.8.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C | 0.59 | 50.0 | 5.04e-01 | 100.0% | 93.3% |
| 3390155 | 1.1.8.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C | 0.59 | 50.0 | 5.07e-01 | 100.0% | 96.5% |
| 3744357 | 1.1.8.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C | 0.59 | 50.0 | 5.07e-01 | 100.0% | 100.0% |
| 3936013 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.58 | 46.0 | 4.52e-01 | 100.0% | 80.0% |
| 3510907 | 1.1.8.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C | 0.58 | 49.0 | 4.97e-01 | 100.0% | 95.5% |
| 4254437 | 1.1.8.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C | 0.58 | 49.0 | 4.95e-01 | 98.9% | 97.6% |
| 3250056 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.58 | 44.0 | 3.95e-01 | 82.8% | 84.0% |
| 5034749 | 10.1.2.194 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) › Lectin_like | 0.57 | 48.0 | 3.95e-01 | 96.6% | 98.8% |
| 1171020 | 1.1.8.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › eIF2_C | 0.57 | 48.0 | 4.74e-01 | 97.7% | 93.8% |
| 3250137 | 11.1.1.820 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Beta-sand_ComC_2nd | 0.56 | 44.0 | 4.48e-01 | 95.4% | 88.2% |
| 5044135 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.56 | 46.0 | 4.32e-01 | 98.9% | 73.6% |
| 4970200 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.56 | 45.0 | 4.45e-01 | 97.7% | 83.2% |
| 4429352 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.56 | 41.0 | 4.14e-01 | 80.5% | 80.0% |
| 3793066 | 1.1.8.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C | 0.55 | 47.0 | 4.70e-01 | 100.0% | 93.5% |
| 3439681 | 10.2.1.55 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › NPL | 0.54 | 40.0 | 3.92e-01 | 98.9% | 73.7% |
| 3622545 | 10.40.1.1 ↗ | beta sandwiches › jelly-roll › PHR domain › PHR domain › PHR | 0.53 | 43.0 | 3.63e-01 | 92.0% | 53.8% |
| 3278844 | 11.1.1.132 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › YscW | 0.53 | 44.0 | 4.26e-01 | 100.0% | 84.6% |
| 2526351 | 3521.1.1.0 ↗ | a+b three layers › Polymerase basic protein 2 cap-binding domain › Polymerase basic protein 2 cap-binding domain › Polymerase basic protein 2 cap-binding domain | 0.51 | 40.0 | 3.70e-01 | 88.5% | 70.6% |
| 3893043 | 6129.1.1.1 ↗ | beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD | 0.50 | 38.0 | 3.05e-01 | 81.6% | 88.1% |
| 4261987 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.50 | 43.0 | 3.92e-01 | 98.9% | 72.0% |
D2
medium
residues 1-24_133-325