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NC_013021.1__YP_003084245.1__PSS2_gp101__00101
Bact-VirNC_013021.1__YP_003084245.1__PSS2_gp101__00101
Identity
- Accession:
- NC_013021 ↗
- Kingdom:
- phage
Quality
85.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 11-86
Domain cluster:
representative
CATH (46)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1k70A01 | 2.30.40.10 | Mainly Beta › Roll › Urease, subunit C; domain 1 › Urease, subunit C, domain 1 | 0.70 | 40.0 | 3.43e-01 | 82.9% | 36.2% |
| 2aujD03 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.63 | 37.0 | 4.01e-01 | 82.9% | 69.4% |
| 4a2bA03 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.63 | 43.0 | 4.04e-01 | 88.2% | 56.8% |
| 1jcfA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.63 | 39.0 | 3.75e-01 | 84.2% | 52.8% |
| 1eo1A00 | 3.30.420.130 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Dinitrogenase iron-molybdenum cofactor biosynthesis domain | 0.63 | 46.0 | 3.94e-01 | 77.6% | 54.0% |
| 1k8kA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.62 | 44.0 | 3.71e-01 | 80.3% | 43.2% |
| 1txdA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.62 | 42.0 | 3.63e-01 | 81.6% | 44.6% |
| 3d6kA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.61 | 54.0 | 4.27e-01 | 100.0% | 60.2% |
| 3hjhA02 | 3.30.2060.10 | Alpha Beta › 2-Layer Sandwich › Penicillin-binding protein 1b fold › Penicillin-binding protein 1b domain | 0.61 | 40.0 | 3.90e-01 | 90.8% | 60.5% |
| 4k3yC00 | 2.120.10.10 | Mainly Beta › 6 Propeller › Neuraminidase › | 0.60 | 49.0 | 3.24e-01 | 92.1% | 79.4% |
| 1r7lA00 | 3.30.2120.10 | Alpha Beta › 2-Layer Sandwich › Bacillus phage protein › Bacillus phage protein-like | 0.59 | 42.0 | 3.83e-01 | 98.7% | 55.3% |
| 1vp4B01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.58 | 52.0 | 3.93e-01 | 100.0% | 49.2% |
| 3ecrB03 | 3.30.160.40 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain | 0.58 | 51.0 | 4.64e-01 | 100.0% | 85.3% |
| 1h10A00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.58 | 39.0 | 3.46e-01 | 84.2% | 45.3% |
| 2ra8A01 | 2.20.140.10 | Mainly Beta › Single Sheet › q64v53_bacfr protein fold › WGR domain | 0.58 | 45.0 | 4.58e-01 | 96.1% | 87.8% |
| 1b9vA00 | 2.120.10.10 | Mainly Beta › 6 Propeller › Neuraminidase › | 0.58 | 48.0 | 3.10e-01 | 93.4% | 68.7% |
| 2gkpA00 | 3.40.1590.10 | Alpha Beta › 3-Layer(aba) Sandwich › NMB0488-like fold › NMB0488-like | 0.57 | 47.0 | 3.79e-01 | 94.7% | 94.5% |
| 2qv8A00 | 3.55.40.10 | Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › minor pseudopilin epsh domain | 0.57 | 40.0 | 3.27e-01 | 72.4% | 73.6% |
| 1inyA00 | 2.120.10.10 | Mainly Beta › 6 Propeller › Neuraminidase › | 0.57 | 48.0 | 3.11e-01 | 96.1% | 77.6% |
| 3rv0B03 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.57 | 46.0 | 4.62e-01 | 98.7% | 88.6% |
| 3dzzA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.57 | 48.0 | 4.05e-01 | 100.0% | 64.8% |
| 2gnxA02 | 3.30.450.240 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.56 | 39.0 | 3.56e-01 | 89.5% | 51.4% |
| 4ritA01 | 3.90.1150.170 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › | 0.56 | 49.0 | 3.56e-01 | 100.0% | 41.8% |
| 2xp1A01 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.56 | 48.0 | 4.54e-01 | 100.0% | 86.3% |
| 2jisA01 | 3.90.1150.170 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › | 0.56 | 47.0 | 3.37e-01 | 96.1% | 41.8% |
| 3fogA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.56 | 43.0 | 3.92e-01 | 84.2% | 76.5% |
| 6liuC02 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.55 | 47.0 | 4.18e-01 | 100.0% | 82.8% |
| 1vgyA01 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.55 | 49.0 | 3.39e-01 | 100.0% | 41.0% |
| 2x5fA02 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.55 | 47.0 | 4.33e-01 | 100.0% | 79.8% |
| 3mazA00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.55 | 48.0 | 4.43e-01 | 100.0% | 90.9% |
| 2kzxA00 | 3.90.1010.20 | Alpha Beta › Alpha-Beta Complex › Sufe protein. Chain: A › | 0.55 | 41.0 | 3.52e-01 | 82.9% | 78.6% |
| 3t32A01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.55 | 45.0 | 3.86e-01 | 96.1% | 66.4% |
| 4qt4A00 | 3.40.50.1470 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidyl-tRNA hydrolase | 0.54 | 46.0 | 3.57e-01 | 100.0% | 83.1% |
| 4s39A02 | 3.30.413.10 | Alpha Beta › 2-Layer Sandwich › Sulfite Reductase Hemoprotein; domain 1 › Sulfite Reductase Hemoprotein, domain 1 | 0.53 | 47.0 | 4.11e-01 | 100.0% | 81.0% |
| 8gtyA02 | 3.30.420.150 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Exopolyphosphatase. Domain 2 | 0.53 | 43.0 | 3.38e-01 | 90.8% | 87.9% |
| 4q05A00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.53 | 45.0 | 3.04e-01 | 98.7% | 63.0% |
| 2db2A01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.53 | 46.0 | 4.31e-01 | 100.0% | 98.9% |
| 7ne4A01 | 2.130.10.120 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain | 0.53 | 39.0 | 2.63e-01 | 93.4% | 18.8% |
| 1yr2A02 | 2.130.10.120 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain | 0.52 | 43.0 | 2.89e-01 | 93.4% | 23.9% |
| 3nraA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.52 | 44.0 | 3.51e-01 | 96.1% | 55.0% |
| 7febA01 | 3.40.30.60 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › FHIPEP family, domain 1 | 0.52 | 45.0 | 3.84e-01 | 100.0% | 90.0% |
| 5o5cB02 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.52 | 45.0 | 3.87e-01 | 100.0% | 70.3% |
| 3lm4A01 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.52 | 34.0 | 2.92e-01 | 90.8% | 37.5% |
| 1pbyB00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.52 | 41.0 | 2.74e-01 | 89.5% | 25.8% |
| 3oyyA02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.51 | 32.0 | 3.45e-01 | 78.9% | 73.8% |
| 3kenA00 | 3.40.850.10 | Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain | 0.50 | 42.0 | 2.85e-01 | 97.4% | 91.9% |
ECOD (55)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4203354 | 252.2.1.9 ↗ | a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › PF27551 | 0.71 | 63.0 | 5.84e-01 | 100.0% | 76.8% |
| 5037858 | 2484.2.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Methylated DNA-protein cysteine methyltransferase domain › Methylated DNA-protein cysteine methyltransferase domain | 0.70 | 37.0 | 3.90e-01 | 78.9% | 55.7% |
| 3588181 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.69 | 42.0 | 4.32e-01 | 82.9% | 62.7% |
| 3980414 | 65.1.1.0 ↗ | beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases | 0.67 | 35.0 | 3.93e-01 | 81.6% | 65.0% |
| 5056676 | 319.1.1.0 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones | 0.66 | 40.0 | 3.63e-01 | 84.2% | 46.0% |
| 4082107 | 7089.1.1.3 ↗ | a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › MmoD | 0.61 | 43.0 | 4.41e-01 | 97.4% | 80.0% |
| 3592743 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.61 | 48.0 | 4.79e-01 | 94.7% | 85.0% |
| 4606103 | 2484.1.1.174 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH | 0.60 | 44.0 | 3.87e-01 | 84.2% | 50.0% |
| 4028916 | 241.15.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain | 0.60 | 51.0 | 4.63e-01 | 98.7% | 81.8% |
| 4679171 | 2484.1.1.174 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH | 0.60 | 45.0 | 3.94e-01 | 84.2% | 53.0% |
| 4259228 | 2484.1.1.174 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH | 0.60 | 42.0 | 3.80e-01 | 81.6% | 51.8% |
| 3461127 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.59 | 48.0 | 4.74e-01 | 100.0% | 87.5% |
| 3333293 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.59 | 46.0 | 4.67e-01 | 98.7% | 89.3% |
| 4564292 | 2484.1.1.174 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH | 0.59 | 45.0 | 3.95e-01 | 82.9% | 72.2% |
| 3366964 | 5.1.4.94 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Det1 | 0.58 | 46.0 | 3.08e-01 | 86.8% | 30.3% |
| 3971082 | 241.2.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like | 0.58 | 50.0 | 4.21e-01 | 98.7% | 77.8% |
| 3744424 | 312.1.1.6 ↗ | a+b three layers › HIT-like › HIT-related › HIT-related › CwfJ_C_2,CwfJ_C_1 | 0.58 | 41.0 | 2.98e-01 | 73.7% | 39.5% |
| 4995425 | 2003.2.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Formate dehydrogenase/DMSO reductase, domains 2 and 3 › Formate dehydrogenase/DMSO reductase, domains 2 and 3 › Molybdopterin | 0.58 | 40.0 | 2.63e-01 | 72.4% | 91.8% |
| 4628536 | 2484.1.1.174 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH | 0.58 | 44.0 | 3.89e-01 | 82.9% | 73.0% |
| 4978329 | 331.10.2.0 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase | 0.57 | 42.0 | 4.15e-01 | 100.0% | 72.3% |
| 4216155 | 2484.1.1.174 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH | 0.57 | 44.0 | 3.85e-01 | 84.2% | 70.0% |
| 4010765 | 2484.1.1.174 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH | 0.56 | 42.0 | 3.68e-01 | 82.9% | 50.4% |
| 3932534 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.56 | 43.0 | 4.02e-01 | 82.9% | 83.2% |
| 4600693 | 2484.1.1.174 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH | 0.56 | 43.0 | 3.71e-01 | 84.2% | 68.8% |
| 3282198 | 873.1.1.7 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › Arabinose_bd | 0.56 | 41.0 | 3.06e-01 | 78.9% | 55.0% |
| 4229131 | 2011.2.1.3 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › Pept_tRNA_hydro | 0.56 | 48.0 | 3.67e-01 | 100.0% | 83.6% |
| 4039156 | 2484.1.1.174 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH | 0.55 | 43.0 | 3.83e-01 | 84.2% | 70.9% |
| 3234136 | 10.1.1.4 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin | 0.55 | 47.0 | 3.95e-01 | 100.0% | 64.0% |
| 3512065 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.55 | 39.0 | 4.12e-01 | 84.2% | 90.8% |
| 3740759 | 4099.1.1.3 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Spc24 | 0.55 | 39.0 | 4.27e-01 | 100.0% | 96.7% |
| 3501432 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.55 | 39.0 | 3.56e-01 | 85.5% | 53.6% |
| 2483342 | 2011.2.1.3 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › Pept_tRNA_hydro | 0.54 | 47.0 | 3.56e-01 | 100.0% | 78.6% |
| 4966140 | 239.1.1.0 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like | 0.54 | 37.0 | 3.48e-01 | 71.1% | 76.8% |
| 3599413 | 3986.1.1.0 ↗ | a+b two layers › GTP-binding protein lepA C-terminal domain-like › GTP-binding protein lepA C-terminal domain › GTP-binding protein lepA C-terminal domain | 0.54 | 41.0 | 3.59e-01 | 81.6% | 79.1% |
| 3435879 | 2484.1.1.11 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Ribosomal_L18p | 0.54 | 41.0 | 3.38e-01 | 81.6% | 46.4% |
| 3935686 | 109.4.1.1399 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Tuberin, DUF3384 | 0.54 | 41.0 | 2.34e-01 | 82.9% | 8.3% |
| None | — | 0.54 | 44.0 | 2.90e-01 | 94.7% | 33.7% | |
| 3968730 | 873.1.1.7 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › Arabinose_bd | 0.53 | 40.0 | 3.01e-01 | 80.3% | 56.9% |
| 3486200 | 5.1.5.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed | 0.53 | 42.0 | 2.66e-01 | 89.5% | 16.4% |
| 5053501 | 2484.1.1.21 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › BcrAD_BadFG | 0.53 | 40.0 | 2.82e-01 | 86.8% | 22.4% |
| 5023930 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.53 | 37.0 | 3.67e-01 | 94.7% | 68.2% |
| 3844858 | 220.1.1.39 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › ZFYVE21_C | 0.53 | 39.0 | 3.07e-01 | 77.6% | 68.2% |
| 3356481 | 386.1.1.117 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › DUF7028 | 0.52 | 36.0 | 3.55e-01 | 100.0% | 66.3% |
| 3889588 | 233.1.1.1 ↗ | a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_I | 0.52 | 45.0 | 3.52e-01 | 100.0% | 97.1% |
| 4218926 | 2484.1.1.174 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH | 0.52 | 39.0 | 3.49e-01 | 84.2% | 71.7% |
| 4665484 | 5.1.4.62 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PROPPIN | 0.52 | 45.0 | 2.81e-01 | 97.4% | 66.1% |
| 3233582 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.52 | 39.0 | 2.66e-01 | 94.7% | 20.0% |
| 3229011 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.52 | 44.0 | 3.64e-01 | 98.7% | 89.7% |
| 4073110 | 12.3.1.24 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › YidC_periplas | 0.51 | 43.0 | 3.04e-01 | 97.4% | 88.5% |
| 2075292 | 3195.1.1.1 ↗ | extended segments › Mediator of RNA polymerase II transcription subunit 6 › Mediator of RNA polymerase II transcription subunit 6 › Mediator of RNA polymerase II transcription subunit 6 › Med6 | 0.51 | 39.0 | 3.18e-01 | 82.9% | 56.7% |
| 4500042 | 2004.1.1.87 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N | 0.51 | 43.0 | 2.71e-01 | 100.0% | 52.1% |
| 3220742 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.51 | 42.0 | 3.36e-01 | 98.7% | 76.0% |
| 4039170 | 2004.1.1.159 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M | 0.50 | 42.0 | 2.97e-01 | 94.7% | 83.5% |
| 3496925 | 7568.1.1.0 ↗ | a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain | 0.50 | 45.0 | 3.17e-01 | 100.0% | 40.4% |
| 3592277 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.50 | 39.0 | 3.07e-01 | 88.2% | 59.5% |
D2
high
residues 104-207
Domain cluster:
representative
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ra1A03 | 1.20.58.770 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.64 | 39.0 | 4.76e-01 | 91.3% | 100.0% |
| 6xy4A01 | 1.10.437.10 | Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like | 0.63 | 49.0 | 4.68e-01 | 83.7% | 74.0% |
| 6k9pB02 | 1.20.1300.20 | Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Peptidase C65 Otubain, subdomain 2 | 0.61 | 43.0 | 3.78e-01 | 73.1% | 82.2% |
| 3axjB02 | 1.20.58.200 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 | 0.58 | 42.0 | 4.61e-01 | 91.3% | 92.9% |
| 3q2eA00 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.58 | 43.0 | 4.27e-01 | 98.1% | 75.7% |
| 2d2sA02 | 1.20.58.1220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Exo84p, C-terminal helical domain | 0.56 | 41.0 | 4.19e-01 | 76.0% | 94.1% |
| 2af7D00 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.55 | 46.0 | 4.42e-01 | 93.3% | 85.1% |
| 4yibA01 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.54 | 40.0 | 3.58e-01 | 80.8% | 93.7% |
| 2cwqA00 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.54 | 44.0 | 4.20e-01 | 92.3% | 90.5% |
| 1hx8A01 | 1.25.40.90 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.51 | 46.0 | 4.42e-01 | 100.0% | 89.0% |
| 3l0zC00 | 3.40.50.10210 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase (CobT), large domain | 0.50 | 40.0 | 2.92e-01 | 90.4% | 67.0% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5034381 | 186.1.1.4 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_4 | 0.74 | 64.0 | 6.23e-01 | 94.2% | 98.3% |
| 5012503 | 186.1.1.0 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N | 0.68 | 55.0 | 5.77e-01 | 88.5% | 100.0% |
| 4030604 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.58 | 44.0 | 3.71e-01 | 80.8% | 71.9% |
| 4965784 | 3455.1.1.17 ↗ | alpha arrays › WY-domain in RXLR effectors › WY-domain in RXLR effectors › WY-domain in RXLR effectors › DUF7853 | 0.54 | 38.0 | 4.07e-01 | 85.6% | 89.4% |
| 4943370 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.52 | 44.0 | 3.01e-01 | 95.2% | 62.7% |
| 3681598 | 109.4.1.883 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 | 0.51 | 40.0 | 3.24e-01 | 92.3% | 42.9% |
D3
high
residues 216-420
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1aihA00 | 1.10.443.10 | Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core | 0.75 | 56.0 | 6.12e-01 | 100.0% | 91.8% |
| 5jk0B01 | 1.10.443.10 | Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core | 0.71 | 57.0 | 6.21e-01 | 96.6% | 98.3% |
| 1ae9A00 | 1.10.443.10 | Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core | 0.71 | 52.0 | 5.65e-01 | 87.3% | 88.9% |
| 2v6eA03 | 1.10.443.30 | Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Telomere resolvase | 0.65 | 58.0 | 5.62e-01 | 94.1% | 87.1% |
| 3nkhA00 | 1.10.443.10 | Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core | 0.64 | 59.0 | 5.73e-01 | 96.1% | 92.3% |
| 2a3vA02 | 1.10.443.10 | Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core | 0.63 | 58.0 | 5.76e-01 | 95.1% | 93.8% |
| 1u5kA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.60 | 22.0 | 3.35e-01 | 73.7% | 78.0% |
| 5hvqC02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 26.0 | 3.55e-01 | 84.4% | 100.0% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5059725 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.76 | 61.0 | 6.54e-01 | 97.1% | 93.9% |
| 4182686 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.75 | 67.0 | 6.89e-01 | 97.6% | 96.9% |
| 5061203 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.74 | 63.0 | 6.59e-01 | 100.0% | 96.3% |
| 5029991 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.71 | 41.0 | 5.14e-01 | 71.2% | 92.0% |
| 3972891 | 101.1.1.58 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 | 0.71 | 36.0 | 5.05e-01 | 91.7% | 99.0% |
| 5030307 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.70 | 42.0 | 5.24e-01 | 72.2% | 95.2% |
| 4928138 | 101.1.8.0 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes | 0.68 | 61.0 | 6.20e-01 | 93.7% | 100.0% |
| 4969226 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.67 | 43.0 | 5.28e-01 | 72.7% | 97.8% |
| 4965640 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.65 | 56.0 | 5.39e-01 | 88.8% | 84.3% |
| 5041315 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.55 | 29.0 | 3.92e-01 | 71.2% | 100.0% |
| 3588689 | 3529.1.1.0 ↗ | beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain | 0.55 | 16.0 | 2.95e-01 | 80.0% | 94.0% |
| 4950235 | 101.1.2.141 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_24 | 0.54 | 29.0 | 3.68e-01 | 98.0% | 86.7% |
| 4666900 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.53 | 18.0 | 2.25e-01 | 97.1% | 44.8% |
| 4138939 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 21.0 | 3.29e-01 | 76.1% | 93.8% |