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NC_013021.1__YP_003084246.1__PSS2_gp102__00102

Bact-Vir

NC_013021.1__YP_003084246.1__PSS2_gp102__00102

Identity

Accession:
NC_013021 ↗
Kingdom:
phage

Quality

77.3 mean pLDDT

Taxonomy

TaxID: 658401

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-74
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03837.20 best RecT 28.5 1.50e-06 100.0% 33.5%
CATH (41)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4hw0C00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 45.0 3.96e-01 71.9% 45.2%
4rs8A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 48.0 4.34e-01 71.9% 60.7%
2qvoA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 44.0 4.02e-01 71.9% 48.3%
4gyiA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 46.0 4.05e-01 70.3% 58.1%
2i8dA01 3.90.1150.200 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.66 50.0 4.66e-01 82.8% 84.0%
2jtvA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 42.0 4.20e-01 71.9% 66.2%
2rdpA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 44.0 3.42e-01 73.4% 37.1%
4asnA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 43.0 3.85e-01 71.9% 57.8%
5optn00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 46.0 4.05e-01 78.1% 65.6%
3e6mA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 44.0 3.35e-01 73.4% 35.6%
2co5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 46.0 4.00e-01 78.1% 63.0%
5dcaA11 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 42.0 3.58e-01 71.9% 77.1%
1tbxB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 42.0 3.78e-01 71.9% 62.2%
5trdA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 41.0 3.81e-01 71.9% 64.3%
4bpe700 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 42.0 3.65e-01 78.1% 54.5%
5xe7A02 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 40.0 3.35e-01 75.0% 78.0%
3mpoA02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.57 39.0 3.33e-01 71.9% 76.6%
3lfkD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 48.0 3.98e-01 92.2% 88.2%
3cuoD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 37.0 3.32e-01 71.9% 45.7%
7l9pK01 3.30.900.10 Alpha Beta › 2-Layer Sandwich › Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A › HORMA domain 0.56 43.0 3.64e-01 87.5% 98.3%
2fclA00 3.30.460.40 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › 0.56 40.0 3.10e-01 78.1% 37.8%
4uwmA00 3.20.20.30 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Luciferase-like domain 0.56 45.0 2.85e-01 90.6% 97.2%
4ciuA04 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.55 40.0 3.67e-01 82.8% 84.9%
2h4oA00 6.20.120.10 Special › Other non-globular › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 27.0 2.74e-01 76.6% 43.5%
1go4A00 3.30.900.10 Alpha Beta › 2-Layer Sandwich › Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A › HORMA domain 0.53 45.0 3.30e-01 100.0% 73.5%
1pp0B00 3.40.198.10 Alpha Beta › 3-Layer(aba) Sandwich › Delta-endotoxin CytB › Delta-endotoxin CytB-like 0.53 41.0 3.06e-01 89.1% 93.8%
2w01B00 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.53 41.0 2.99e-01 87.5% 67.5%
4ad9A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 31.0 2.94e-01 98.4% 42.9%
1uhvA02 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.53 43.0 2.83e-01 96.9% 97.4%
1s12A00 3.30.70.1490 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cysteine protease Prp 0.53 34.0 3.08e-01 75.0% 44.7%
3m8eA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 41.0 3.58e-01 87.5% 90.1%
4mbsA00 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.52 37.0 2.41e-01 79.7% 29.2%
1xexB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 36.0 2.83e-01 76.6% 59.0%
5xyiK00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 45.0 4.08e-01 100.0% 86.7%
2innB00 1.10.620.20 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A 0.51 44.0 2.63e-01 98.4% 38.9%
2z99A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 36.0 3.26e-01 73.4% 62.1%
1g8mA02 3.40.140.20 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › AICAR transformylase, duplication domain 0.51 43.0 3.20e-01 96.9% 87.5%
2x65A00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.51 40.0 2.63e-01 90.6% 74.9%
1t6sA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 34.0 3.12e-01 70.3% 60.5%
3jamK00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 44.0 3.89e-01 100.0% 82.3%
6uvuA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 36.0 3.15e-01 78.1% 48.1%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4956538 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.72 46.0 4.38e-01 71.9% 56.0%
4983405 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.71 46.0 3.37e-01 71.9% 25.8%
5069629 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.70 49.0 4.77e-01 71.9% 72.9%
4950303 101.1.2.751 alpha arrays › HTH › HTH › winged helix domain › DUF6293_C 0.70 47.0 4.00e-01 75.0% 42.9%
4506359 101.1.2.751 alpha arrays › HTH › HTH › winged helix domain › DUF6293_C 0.70 46.0 4.19e-01 71.9% 51.8%
4968601 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.69 44.0 3.75e-01 71.9% 40.0%
4984339 101.1.2.150 alpha arrays › HTH › HTH › winged helix domain › HTH_45 0.69 44.0 4.25e-01 71.9% 56.0%
5007348 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.69 44.0 3.38e-01 71.9% 28.0%
3366681 101.1.2.111 alpha arrays › HTH › HTH › winged helix domain › RQC 0.69 46.0 3.68e-01 70.3% 60.8%
5032323 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 47.0 4.27e-01 71.9% 60.0%
5009323 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.68 46.0 3.44e-01 70.3% 39.0%
3400082 101.1.2.109 alpha arrays › HTH › HTH › winged helix domain › Rio2_N 0.68 47.0 4.02e-01 71.9% 53.0%
4979195 101.1.2.150 alpha arrays › HTH › HTH › winged helix domain › HTH_45 0.66 46.0 3.98e-01 71.9% 53.7%
4970461 101.1.2.150 alpha arrays › HTH › HTH › winged helix domain › HTH_45 0.66 44.0 4.21e-01 70.3% 70.7%
4964486 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 45.0 4.06e-01 71.9% 74.1%
5054757 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 48.0 3.88e-01 79.7% 86.2%
4956478 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 44.0 4.46e-01 75.0% 70.8%
5038826 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 44.0 3.95e-01 71.9% 63.3%
4966804 101.1.2.530 alpha arrays › HTH › HTH › winged helix domain › HVO_A0114 0.64 44.0 4.04e-01 71.9% 60.0%
5024398 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.64 44.0 3.48e-01 71.9% 45.4%
5077786 101.1.2.927 alpha arrays › HTH › HTH › winged helix domain › DUF7347 0.64 47.0 4.27e-01 78.1% 65.9%
5035276 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 46.0 4.10e-01 76.6% 68.9%
4954867 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 45.0 4.29e-01 78.1% 64.0%
4939406 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 43.0 3.13e-01 71.9% 29.7%
5040967 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 43.0 3.87e-01 71.9% 60.0%
5010381 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 45.0 3.80e-01 78.1% 47.3%
3224878 101.1.15.1 alpha arrays › HTH › HTH › HAT1, C-terminal domain › MOZ_SAS 0.62 36.0 3.24e-01 70.3% 40.0%
3216054 5001.1.1.66 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Srg 0.62 44.0 2.91e-01 78.1% 33.3%
3899864 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 42.0 3.56e-01 71.9% 65.7%
5072831 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 37.0 3.82e-01 71.9% 61.9%
5064866 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 41.0 3.45e-01 71.9% 40.9%
3330811 101.1.1.339 alpha arrays › HTH › HTH › Three-helical HTH › XH 0.59 37.0 3.18e-01 96.9% 40.0%
4533897 101.1.2.508 alpha arrays › HTH › HTH › winged helix domain › PF25872 0.59 40.0 3.08e-01 70.3% 36.7%
3901998 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.59 42.0 2.73e-01 76.6% 32.4%
3687319 101.1.2.520 alpha arrays › HTH › HTH › winged helix domain › DUF7779 0.59 38.0 3.56e-01 73.4% 49.4%
4971829 101.1.2.135 alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.59 41.0 4.04e-01 73.4% 74.3%
3952617 101.1.2.508 alpha arrays › HTH › HTH › winged helix domain › PF25872 0.59 40.0 3.45e-01 70.3% 55.0%
3811338 109.4.1.2260 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1, TPR_6, TPR_19 0.57 38.0 2.53e-01 70.3% 26.6%
4022379 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.56 39.0 3.01e-01 73.4% 54.7%
5063692 101.1.2.55 alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB 0.55 37.0 3.77e-01 73.4% 70.8%
5036081 2008.1.1.15 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › HSDR_N 0.54 46.0 3.19e-01 100.0% 80.8%
4968035 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.54 38.0 3.33e-01 73.4% 52.0%
4051388 7579.1.1.1 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › COesterase 0.54 42.0 2.56e-01 87.5% 72.8%
3586847 101.1.2.66 alpha arrays › HTH › HTH › winged helix domain › Mga 0.54 36.0 3.40e-01 75.0% 55.0%
5049209 101.1.2.46 alpha arrays › HTH › HTH › winged helix domain › HrcA_DNA-bdg 0.54 37.0 3.43e-01 71.9% 61.2%
3341083 109.4.1.728 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.54 36.0 2.34e-01 70.3% 24.0%
None 0.54 44.0 2.63e-01 93.8% 18.3%
4954889 101.1.2.55 alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB 0.53 36.0 3.67e-01 71.9% 75.4%
4977168 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.52 38.0 3.46e-01 78.1% 72.7%
3429998 109.4.1.192 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8 0.52 36.0 2.35e-01 73.4% 22.5%
4964857 101.1.2.925 alpha arrays › HTH › HTH › winged helix domain › DUF7344 0.51 37.0 3.30e-01 78.1% 68.4%
4271117 101.1.2.55 alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB 0.51 37.0 3.35e-01 76.6% 65.9%
5084053 5001.1.1.0 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.51 39.0 2.65e-01 82.8% 53.0%
3928546 101.1.2.47 alpha arrays › HTH › HTH › winged helix domain › S10_plectin 0.50 44.0 3.81e-01 100.0% 79.0%
D2 high residues 77-159
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03837.20 best RecT 27.2 3.70e-06 94.0% 34.5%
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7r97A02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.71 49.0 5.39e-01 97.6% 86.8%
2iayA00 3.30.1820.10 Alpha Beta › 2-Layer Sandwich › Lp2179-like fold › Lp2179-like 0.69 38.0 3.39e-01 84.3% 38.6%
2amhA00 3.90.950.10 Alpha Beta › Alpha-Beta Complex › Maf protein › 0.65 57.0 4.33e-01 97.6% 62.1%
1c9rA04 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.64 48.0 4.42e-01 100.0% 61.7%
2aehA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.64 41.0 3.70e-01 98.8% 48.6%
4obmA00 3.40.630.190 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › LCP protein 0.62 55.0 3.88e-01 100.0% 93.0%
4o89A02 3.30.360.20 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › RNA 3'-terminal phosphate cyclase, insert domain 0.60 53.0 5.14e-01 96.4% 97.9%
3htvA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.60 40.0 3.72e-01 95.2% 52.3%
4h4nA00 2.60.40.3750 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 32.0 3.54e-01 86.7% 67.7%
2rrfA00 2.30.29.160 Mainly Beta › Roll › PH-domain like › Zinc finger FYVE domain-containing protein 21, C-terminal 0.57 42.0 3.56e-01 80.7% 46.1%
2mqdA00 3.30.1460.60 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.57 35.0 3.16e-01 78.3% 42.9%
3iayA03 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.56 46.0 3.47e-01 90.4% 37.6%
4ofdB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 38.0 3.68e-01 71.1% 74.7%
3uroR02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 38.0 3.60e-01 71.1% 70.0%
2ichA01 2.40.370.10 Mainly Beta › Beta Barrel › AttH-like fold › AttH-like domain 0.55 49.0 3.83e-01 100.0% 74.9%
1p32B00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.55 40.0 3.14e-01 77.1% 55.6%
3vynA01 2.60.40.3780 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 37.0 3.71e-01 71.1% 71.3%
1f21A00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.54 38.0 3.15e-01 94.0% 39.5%
2g2sA00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.54 34.0 3.75e-01 78.3% 81.2%
1oypA01 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.53 46.0 3.47e-01 97.6% 78.5%
1bqsA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 48.0 4.25e-01 100.0% 85.7%
1hnfA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 36.0 3.75e-01 71.1% 98.7%
6m9yA00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.53 31.0 3.57e-01 71.1% 84.2%
2ra1A05 2.60.40.2120 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 36.0 3.56e-01 72.3% 98.8%
6gp1A00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.52 32.0 3.55e-01 75.9% 80.0%
3shsA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 45.0 4.36e-01 100.0% 87.0%
3dcxA00 2.30.29.50 Mainly Beta › Roll › PH-domain like › Bacterial Pleckstrin homology domain 0.51 38.0 3.38e-01 83.1% 55.6%
2mklC00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 45.0 4.21e-01 100.0% 88.6%
3cyjA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.51 44.0 3.90e-01 97.6% 92.6%
3u1kC01 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.50 43.0 3.23e-01 97.6% 75.2%
1loxA02 2.60.60.20 Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain 0.50 41.0 3.78e-01 91.6% 100.0%
ECOD (43)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5004275 330.1.1.14 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › RecT 0.91 87.0 7.88e-01 100.0% 83.8%
3982792 330.1.1.14 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › RecT 0.83 74.0 5.87e-01 100.0% 51.3%
6679 274.1.1.12 a+b two layers › Pili subunits › Pili subunits › Pili subunits › T2SSJ 0.81 50.0 3.92e-01 71.1% 32.7%
3960733 330.8.1.1 a+b two layers › dsRBD-like › Rv2632c-like › Rv2632c-like › Rv2632c-like 0.77 56.0 5.61e-01 97.6% 74.1%
4040973 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.72 49.0 5.31e-01 94.0% 84.3%
3789856 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.69 50.0 4.51e-01 100.0% 54.8%
4986263 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.65 49.0 3.98e-01 100.0% 42.6%
5069333 2484.1.1.34 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 0.64 45.0 2.91e-01 95.2% 16.0%
3271756 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.63 47.0 3.71e-01 97.6% 37.1%
5063417 11.1.1.236 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Mannosidase_ig 0.63 43.0 4.14e-01 71.1% 70.5%
1322782 2484.5.1.1 mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RVT_connect 0.63 46.0 3.96e-01 100.0% 48.5%
3879303 330.1.1.5 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DND1_DSRM 0.63 48.0 4.92e-01 98.8% 86.3%
5049116 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.62 47.0 3.71e-01 98.8% 37.8%
3663326 292.2.1.1 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.61 35.0 3.27e-01 78.3% 45.7%
4389184 11.1.1.1065 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF25971 0.61 42.0 3.87e-01 71.1% 62.9%
2125196 2485.2.1.1 a+b three layers › Thioredoxin-like › RNA 3'-terminal phosphate cyclase, RPTC, insert domain › RNA 3'-terminal phosphate cyclase, RPTC, insert domain › RTC_insert 0.60 53.0 5.04e-01 97.6% 93.9%
1145674 11.1.1.108 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C2-set_2 0.60 41.0 3.80e-01 71.1% 69.8%
3825992 2484.1.1.34 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 0.59 49.0 3.47e-01 90.4% 34.4%
3951937 330.8.1.1 a+b two layers › dsRBD-like › Rv2632c-like › Rv2632c-like › Rv2632c-like 0.59 53.0 5.24e-01 100.0% 94.4%
3543785 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 40.0 3.86e-01 72.3% 70.5%
None 0.57 47.0 2.80e-01 90.4% 12.6%
4022366 2484.1.1.161 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.57 47.0 2.79e-01 90.4% 12.6%
5046366 2484.1.1.79 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Raco_middle 0.57 50.0 4.03e-01 100.0% 50.6%
3587689 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 38.0 3.37e-01 71.1% 62.5%
3675472 5.1.5.45 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › PROPPIN 0.55 38.0 2.78e-01 90.4% 25.5%
3601594 848.1.1.0 a+b complex topology › Hsp33 domain › Hsp33 domain › Hsp33 domain 0.55 50.0 3.37e-01 100.0% 43.8%
4363805 292.2.1.9 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › Polo_box_4 0.55 37.0 3.67e-01 75.9% 64.4%
3266298 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.55 41.0 3.45e-01 86.7% 48.5%
4940278 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.55 48.0 3.90e-01 100.0% 62.4%
3701806 848.1.1.1 a+b complex topology › Hsp33 domain › Hsp33 domain › Hsp33 domain › HSP33 0.54 49.0 3.34e-01 100.0% 42.7%
3650703 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.54 46.0 3.78e-01 100.0% 69.7%
3660107 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.54 46.0 3.97e-01 100.0% 81.4%
4958553 2484.1.1.34 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 0.54 46.0 3.43e-01 97.6% 97.7%
3743289 241.15.1.0 a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain 0.53 44.0 4.11e-01 94.0% 83.8%
3794644 11.1.1.108 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C2-set_2 0.53 47.0 4.02e-01 100.0% 71.9%
4025728 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.53 33.0 2.99e-01 98.8% 43.5%
3677752 2484.1.1.114 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Med13_C 0.52 46.0 3.40e-01 100.0% 45.8%
2429408 76.1.1.1 beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I › Endotoxin_M 0.52 41.0 3.02e-01 85.5% 72.9%
3821429 241.15.1.0 a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain 0.51 46.0 3.71e-01 100.0% 56.2%
3618372 2484.1.1.99 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Peptidase_A17 0.51 41.0 3.68e-01 100.0% 61.7%
3420395 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.51 42.0 2.77e-01 89.2% 22.0%
4102293 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.51 42.0 3.25e-01 90.4% 44.2%
4276539 4194.1.1.2 a+b duplicates or obligate multimers › Prenyltransferase-like › Prenyltransferase-like › Prenyltransferase-like › Trp_DMAT 0.51 44.0 2.83e-01 96.4% 36.7%
D3 high residues 255-309
PDB
Domain cluster: representative
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2g47A04 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.73 50.0 3.28e-01 72.7% 34.2%
2i5uA00 1.10.10.630 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › DnaD domain-like 0.67 54.0 4.90e-01 92.7% 81.8%
2a5yB03 1.10.8.490 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ced-4 linker helical domain-like 0.64 54.0 4.94e-01 100.0% 70.5%
4gmqA00 1.10.8.840 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ribosome-associated complex head domain 0.62 52.0 4.54e-01 100.0% 96.7%
3lynB00 1.20.150.10 Mainly Alpha › Up-down Bundle › Lysin › Fertilization protein 0.61 49.0 3.84e-01 90.9% 69.4%
3bbzA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.61 46.0 4.80e-01 85.5% 100.0%
2o71A00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.61 45.0 3.89e-01 87.3% 49.5%
3ezqA00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.60 44.0 3.65e-01 85.5% 40.0%
3uoeA01 1.10.1530.10 Mainly Alpha › Orthogonal Bundle › Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel 0.60 50.0 4.42e-01 98.2% 66.7%
4bqnA02 1.10.10.2490 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.59 47.0 3.65e-01 89.1% 100.0%
1aisB02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.54 47.0 4.00e-01 100.0% 60.6%
2j1oA00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.54 42.0 2.82e-01 90.9% 51.0%
1vw4L01 3.90.1030.10 Alpha Beta › Alpha-Beta Complex › 50s Ribosomal Protein L17; Chain: A, › Ribosomal protein L17 0.53 36.0 2.83e-01 72.7% 37.0%
2h5nC00 1.10.3680.10 Mainly Alpha › Orthogonal Bundle › TerB-like › TerB-like 0.53 42.0 3.38e-01 94.5% 66.1%
3ih6E00 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.52 41.0 2.90e-01 89.1% 91.8%
1ezjA01 1.10.287.320 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Viral phosphoprotein oligmorisation site domain 0.51 35.0 3.47e-01 76.4% 66.1%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3287282 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.66 55.0 4.75e-01 100.0% 80.0%
4624393 110.1.1.1 alpha arrays › DEATH domain › DEATH domain › DEATH domain › Death 0.61 45.0 3.91e-01 87.3% 50.0%
2883966 143.1.1.0 alpha arrays › PABP domain-like › PABC(PABP) domain › PABC(PABP) domain 0.59 49.0 4.68e-01 98.2% 83.3%
5013682 632.18.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › hypothetical protein PA2901 › hypothetical protein PA2901 0.57 43.0 3.83e-01 87.3% 67.8%
3170882 603.1.1.210 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Tmemb_170 0.56 45.0 3.65e-01 94.5% 75.8%
4559208 563.1.1.1 alpha bundles › ATPD N-terminal domain-like › N-terminal domain of the delta subunit of the F1F0-ATP synthase › N-terminal domain of the delta subunit of the F1F0-ATP synthase › OSCP 0.55 38.0 2.68e-01 72.7% 45.8%
5011224 7516.1.1.2 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 0.55 40.0 2.58e-01 80.0% 30.5%
5039785 632.22.1.200 alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats › PF26119 0.55 41.0 3.55e-01 85.5% 89.4%
3973390 632.18.1.1 alpha bundles › immunoglobulin/albumin-binding domain-like › hypothetical protein PA2901 › hypothetical protein PA2901 › DUF4398 0.53 39.0 3.72e-01 85.5% 91.4%
3695642 5054.1.1.8 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 0.53 36.0 2.95e-01 76.4% 37.1%
3243507 101.1.1.289 alpha arrays › HTH › HTH › Three-helical HTH › HOCHOB 0.52 34.0 3.33e-01 72.7% 58.5%
3878135 601.1.1.7 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › Talin_IBS2B 0.52 39.0 2.85e-01 83.6% 48.8%
4990053 632.18.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › hypothetical protein PA2901 › hypothetical protein PA2901 0.52 38.0 3.55e-01 80.0% 82.9%