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NC_013155.1__YP_003127330.1__AVT73_gp43__00043

Bact-Vir

NC_013155.1__YP_003127330.1__AVT73_gp43__00043

Identity

Accession:
NC_013155 ↗
Kingdom:
phage

Quality

80.2 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-82
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF24185.2 best DUF7413 157.4 2.90e-46 100.0% 59.1%
CATH (52)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4q5nA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.69 60.0 5.28e-01 97.3% 65.2%
4nsmA00 6.10.250.2770 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.69 47.0 4.83e-01 70.7% 98.6%
1xmxA03 1.10.10.680 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Hypothetical protein VC1899 (Restriction endonuclease-like) 0.65 49.0 4.64e-01 96.0% 67.4%
2l01A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 53.0 5.30e-01 98.7% 88.3%
2wauA02 1.20.58.830 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.63 56.0 4.80e-01 100.0% 91.0%
5xnsC00 1.10.10.580 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Structural maintenance of chromosome 1. Chain E 0.63 53.0 5.44e-01 93.3% 98.6%
3fvcA02 1.20.5.1890 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.62 38.0 3.46e-01 100.0% 47.0%
3h0dA01 3.30.56.130 Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › Transcriptional regulator CtsR, winged HTH domain 0.61 51.0 5.24e-01 93.3% 100.0%
2zqeA00 3.30.1370.110 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.61 51.0 5.00e-01 93.3% 87.5%
1u5tA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 51.0 5.19e-01 98.7% 100.0%
2wa0A01 1.10.10.1200 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › MAGE homology domain, winged helix WH1 motif 0.60 52.0 4.75e-01 100.0% 75.2%
1wj5A01 1.10.10.980 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › CST, Suppressor of Cdc13 homolog, complex subunit STN1, N-terminal domain 0.60 53.0 4.84e-01 98.7% 98.0%
3keyA02 3.30.1370.230 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Stn1, C-terminal wHTH domain 0.59 49.0 4.74e-01 93.3% 92.0%
3sqnB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 43.0 4.60e-01 88.0% 96.7%
2zkzC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 45.0 4.29e-01 81.3% 100.0%
4q5eA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.59 34.0 3.43e-01 94.7% 56.0%
3dv8A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 46.0 4.63e-01 93.3% 83.3%
7dl8C01 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.59 49.0 4.66e-01 92.0% 79.8%
1ybzA00 1.20.59.10 Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase 0.58 44.0 4.48e-01 82.7% 80.3%
2o0bA01 3.65.10.10 Alpha Beta › Alpha-beta prism › UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain › Enolpyruvate transferase domain 0.58 42.0 3.16e-01 93.3% 28.7%
3zieD00 3.30.110.150 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › SepF-like protein 0.57 44.0 4.29e-01 88.0% 76.8%
2dk8A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 44.0 4.63e-01 92.0% 98.5%
1hw1A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 46.0 4.65e-01 90.7% 92.0%
2kloA00 1.10.10.1420 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › DNA replication factor Cdt1, C-terminal WH domain 0.57 49.0 4.06e-01 98.7% 58.0%
6uvuA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 41.0 3.74e-01 85.3% 56.7%
1xmkA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 45.0 4.46e-01 96.0% 84.8%
3l09A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 45.0 4.35e-01 88.0% 79.8%
2vqcA00 1.10.10.1470 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › F-112 protein-like 0.56 47.0 4.86e-01 98.7% 98.6%
1s12A00 3.30.70.1490 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cysteine protease Prp 0.56 45.0 4.18e-01 86.7% 78.7%
2mh2A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 42.0 4.48e-01 84.0% 100.0%
1ucrB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 43.0 4.37e-01 89.3% 86.7%
6lbsB01 3.30.1370.230 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Stn1, C-terminal wHTH domain 0.55 43.0 4.29e-01 88.0% 94.9%
5cvrA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 45.0 4.40e-01 93.3% 82.1%
1i6uA01 3.30.1370.30 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.55 41.0 4.24e-01 88.0% 89.7%
4kr6A01 3.30.2130.30 Alpha Beta › 2-Layer Sandwich › VC0802-like › 0.55 44.0 3.45e-01 92.0% 39.8%
5tl8A00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.55 43.0 2.72e-01 88.0% 73.1%
3f8kA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.54 41.0 3.45e-01 98.7% 46.6%
4ad9A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 47.0 4.56e-01 100.0% 96.4%
3f6oB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 42.0 4.00e-01 90.7% 71.4%
1x19A02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.54 42.0 3.36e-01 93.3% 40.6%
3v97A03 3.30.750.80 Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › RNA methyltransferase domain (HRMD) like 0.54 42.0 4.08e-01 85.3% 96.5%
5optn00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 41.0 3.83e-01 82.7% 71.0%
2v9vA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 39.0 4.14e-01 89.3% 98.3%
4hw0C00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 38.0 3.61e-01 93.3% 64.5%
7xhzA01 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.52 38.0 3.29e-01 80.0% 94.3%
7pzaA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 42.0 4.05e-01 90.7% 84.9%
7m0oA02 3.65.10.10 Alpha Beta › Alpha-beta prism › UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain › Enolpyruvate transferase domain 0.52 36.0 2.77e-01 81.3% 29.9%
1hciA03 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.51 44.0 3.84e-01 100.0% 82.5%
3m8eA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 41.0 3.76e-01 90.7% 71.3%
3jamK00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 40.0 3.76e-01 90.7% 70.8%
3euhC02 1.10.10.2260 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › MukE-like family, C-terminal domain 0.50 41.0 3.77e-01 97.3% 87.0%
4bpe700 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 39.0 3.61e-01 96.0% 66.3%
ECOD (53)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
None 0.69 62.0 6.12e-01 100.0% 93.8%
4937013 101.1.2.39 alpha arrays › HTH › HTH › winged helix domain › SMC_ScpA 0.66 57.0 5.79e-01 96.0% 96.0%
3404984 149.1.1.1 alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 0.65 58.0 3.52e-01 100.0% 73.9%
4490167 101.1.2.65 alpha arrays › HTH › HTH › winged helix domain › Rad21_Rec8 0.65 57.0 5.11e-01 100.0% 70.5%
140413 101.1.2.128 alpha arrays › HTH › HTH › winged helix domain › DUF2582 0.65 53.0 5.49e-01 98.7% 98.6%
4930738 101.1.2.39 alpha arrays › HTH › HTH › winged helix domain › SMC_ScpA 0.64 54.0 5.63e-01 93.3% 100.0%
5058139 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 53.0 5.48e-01 92.0% 98.6%
4562408 101.1.2.76 alpha arrays › HTH › HTH › winged helix domain › CtsR 0.63 51.0 5.12e-01 86.7% 90.7%
3579195 101.1.2.65 alpha arrays › HTH › HTH › winged helix domain › Rad21_Rec8 0.63 52.0 5.37e-01 93.3% 97.1%
4945701 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 52.0 5.01e-01 92.0% 81.2%
3364232 101.1.2.65 alpha arrays › HTH › HTH › winged helix domain › Rad21_Rec8 0.62 53.0 5.08e-01 94.7% 85.9%
4983445 101.1.2.39 alpha arrays › HTH › HTH › winged helix domain › SMC_ScpA 0.61 49.0 5.04e-01 96.0% 94.3%
4087039 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.61 54.0 5.30e-01 100.0% 96.2%
3785289 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.61 45.0 4.75e-01 92.0% 92.3%
4985497 101.1.2.922 alpha arrays › HTH › HTH › winged helix domain › DUF7123 0.61 49.0 4.80e-01 92.0% 82.4%
1298450 328.7.1.1 a+b two layers › IF3-like › Smr domain › Smr domain › Smr 0.61 51.0 4.97e-01 93.3% 85.4%
3455192 320.1.1.11 a+b two layers › R3H domain-like › R3H domain › R3H domain › PF27261 0.60 44.0 4.45e-01 93.3% 81.3%
4008670 101.1.2.783 alpha arrays › HTH › HTH › winged helix domain › PF30336 0.60 49.0 5.08e-01 93.3% 98.6%
2329747 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 51.0 4.80e-01 97.3% 78.3%
3702326 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 50.0 4.99e-01 97.3% 95.0%
3602953 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 48.0 4.92e-01 89.3% 95.7%
5077534 1076.1.1.1 alpha bundles › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Rce1-like 0.59 51.0 3.57e-01 100.0% 81.9%
3651024 101.1.2.65 alpha arrays › HTH › HTH › winged helix domain › Rad21_Rec8 0.58 49.0 4.44e-01 98.7% 80.0%
3182652 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.58 50.0 4.95e-01 100.0% 96.2%
4992669 101.1.2.39 alpha arrays › HTH › HTH › winged helix domain › SMC_ScpA 0.58 49.0 4.81e-01 97.3% 92.5%
3883014 101.1.2.490 alpha arrays › HTH › HTH › winged helix domain › WHD_CHMP7 0.58 46.0 4.61e-01 93.3% 86.3%
3595128 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.58 42.0 4.43e-01 92.0% 92.3%
4124327 101.1.2.490 alpha arrays › HTH › HTH › winged helix domain › WHD_CHMP7 0.57 50.0 4.74e-01 100.0% 97.8%
3223085 101.1.2.22 alpha arrays › HTH › HTH › winged helix domain › PCI 0.57 46.0 4.42e-01 98.7% 76.7%
3461177 101.1.2.88 alpha arrays › HTH › HTH › winged helix domain › Dimerisation 0.57 49.0 4.54e-01 100.0% 75.0%
5016597 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.57 43.0 3.90e-01 82.7% 61.0%
3270814 101.1.2.82 alpha arrays › HTH › HTH › winged helix domain › TBPIP 0.57 44.0 4.38e-01 94.7% 80.0%
4927597 873.1.1.0 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain 0.56 43.0 3.65e-01 82.7% 72.0%
3781962 101.1.2.68 alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc34 0.56 43.0 4.55e-01 86.7% 98.5%
3781952 101.1.2.45 alpha arrays › HTH › HTH › winged helix domain › SAC3_GANP 0.55 44.0 4.04e-01 98.7% 64.8%
3411130 328.7.1.1 a+b two layers › IF3-like › Smr domain › Smr domain › Smr 0.55 49.0 4.29e-01 98.7% 92.7%
1147791 101.1.2.87 alpha arrays › HTH › HTH › winged helix domain › PaaX 0.55 44.0 4.02e-01 93.3% 66.0%
5062113 328.9.1.1 a+b two layers › IF3-like › SepF C-terminal domain › SepF C-terminal domain › SepF 0.55 42.0 4.10e-01 88.0% 75.9%
3593500 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 44.0 4.06e-01 100.0% 69.0%
3462066 320.2.1.2 a+b two layers › R3H domain-like › Ribosomal protein S8, N-terminal domain › Ribosomal protein S8, N-terminal domain › DUF4504 0.53 44.0 4.23e-01 94.7% 84.4%
1518902 101.1.2.53 alpha arrays › HTH › HTH › winged helix domain › Mnd1 0.53 42.0 4.45e-01 89.3% 97.0%
3554511 101.1.2.206 alpha arrays › HTH › HTH › winged helix domain › SAMD1_WH 0.53 44.0 4.32e-01 92.0% 91.3%
3972247 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 39.0 4.23e-01 84.0% 100.0%
3727831 3012.1.1.1 a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › Trehalose_PPase 0.52 39.0 3.82e-01 81.3% 85.9%
5032696 328.9.1.1 a+b two layers › IF3-like › SepF C-terminal domain › SepF C-terminal domain › SepF 0.52 38.0 3.77e-01 88.0% 76.2%
5027056 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.51 42.0 4.05e-01 98.7% 78.9%
3916504 304.48.1.0 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.51 43.0 3.10e-01 98.7% 76.5%
3249558 3012.1.1.1 a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › Trehalose_PPase 0.51 39.0 3.82e-01 81.3% 90.0%
5042418 328.9.1.1 a+b two layers › IF3-like › SepF C-terminal domain › SepF C-terminal domain › SepF 0.51 39.0 3.88e-01 86.7% 78.8%
3626537 3012.1.1.5 a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › T6PP_C 0.51 37.0 3.45e-01 77.3% 94.7%
3972538 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.50 43.0 4.01e-01 98.7% 95.8%
3304041 3012.1.1.1 a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › Trehalose_PPase 0.50 38.0 3.74e-01 81.3% 93.8%
3984781 304.48.1.1 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.50 38.0 3.06e-01 84.0% 66.9%