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NC_013197.1__YP_003169735.1__P23-77_gp30__00030

Bact-Vir

NC_013197.1__YP_003169735.1__P23-77_gp30__00030

Identity

Accession:
NC_013197 ↗
Kingdom:
phage

Quality

76.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-196
PDB
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3s8zA02 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.78 60.0 4.98e-01 98.9% 47.2%
8eg0B01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.77 59.0 4.74e-01 98.4% 42.3%
1npeA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.77 60.0 5.30e-01 98.4% 57.8%
1c5kA02 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.75 60.0 5.25e-01 98.4% 58.3%
8adlB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.70 58.0 4.78e-01 99.5% 51.3%
2xziA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.69 64.0 4.96e-01 99.5% 47.8%
3sreA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.68 64.0 5.22e-01 100.0% 57.4%
7ne4A01 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.68 58.0 4.79e-01 97.9% 51.7%
4bbwA02 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.68 63.0 5.05e-01 100.0% 77.2%
6vp6A03 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.67 57.0 4.66e-01 97.9% 51.2%
2w5nA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.67 62.0 4.94e-01 100.0% 57.8%
3mmyA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.66 61.0 4.89e-01 99.5% 61.0%
5hy7B01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.66 61.0 4.66e-01 99.5% 59.7%
2dg1C00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.65 60.0 4.99e-01 99.5% 67.8%
1q7fB00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.64 60.0 5.15e-01 100.0% 68.1%
6n8pA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.63 59.0 4.66e-01 99.5% 64.1%
3ei3A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.63 59.0 4.80e-01 99.5% 64.0%
3nvnA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.63 57.0 4.51e-01 97.9% 59.3%
6p2kB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.63 58.0 4.62e-01 100.0% 68.3%
3tc9A02 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.63 58.0 4.82e-01 99.5% 74.3%
1k32A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.62 57.0 4.65e-01 99.5% 72.0%
3hfqA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.62 56.0 4.61e-01 97.9% 65.0%
1ri6A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.62 57.0 4.69e-01 99.5% 71.5%
6p2lA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.62 58.0 4.84e-01 100.0% 92.2%
4o9dA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.61 56.0 4.43e-01 99.5% 61.9%
8hmcA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.61 57.0 4.73e-01 99.5% 73.7%
8cukB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.61 56.0 4.59e-01 97.9% 63.6%
4q1vA01 2.140.10.30 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain 0.61 56.0 4.22e-01 99.5% 58.5%
3g4eA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.61 56.0 4.80e-01 99.5% 69.0%
1xfdA01 2.140.10.30 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain 0.60 55.0 4.14e-01 99.5% 55.8%
7obmA01 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.60 55.0 4.61e-01 99.5% 65.7%
3o4hA01 2.130.10.150 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Peptidase/esterase 'gauge' domain 0.60 56.0 4.73e-01 100.0% 67.7%
2ecfA01 2.140.10.30 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain 0.59 54.0 4.12e-01 99.5% 67.3%
3imoC00 3.30.920.70 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › 0.58 28.0 3.63e-01 76.1% 80.4%
1v58A01 3.10.450.70 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Disulphide bond isomerase, DsbC/G, N-terminal 0.57 24.0 3.71e-01 75.0% 100.0%
5z5dA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 41.0 4.04e-01 96.3% 77.4%
2bvbA00 2.60.120.710 Mainly Beta › Sandwich › Jelly Rolls › Toxoplasma gondii micronemal protein 1 TgMIC1 0.52 34.0 3.88e-01 84.6% 89.8%
1yrzA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 41.0 4.06e-01 96.3% 78.0%
1dhkB00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 40.0 3.96e-01 98.9% 78.5%
4trtA03 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.51 27.0 3.28e-01 86.7% 77.5%
ECOD (78)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3347232 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.76 61.0 4.83e-01 98.4% 43.3%
3833799 5.1.4.266 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_IFT122_1st 0.76 58.0 4.76e-01 99.5% 45.2%
3594792 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.75 61.0 4.99e-01 98.4% 49.7%
4563304 5.1.4.35 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Lactonase 0.74 60.0 4.95e-01 98.4% 48.8%
4890852 5.1.5.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.73 57.0 4.78e-01 98.4% 48.6%
3387201 5.1.3.20 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › PD40 0.73 58.0 4.92e-01 98.9% 51.5%
3178564 5.1.4.119 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Rav1p_C 0.73 62.0 4.87e-01 100.0% 45.4%
3660454 5.1.5.96 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › FBA_3 0.72 60.0 5.07e-01 100.0% 55.3%
3520903 3864.1.1.0 extended segments › Mitochondrial 54S ribosomal protein L28 › Mitochondrial 54S ribosomal protein L28 › Mitochondrial 54S ribosomal protein L28 0.72 57.0 4.12e-01 97.9% 31.2%
3403740 5.1.3.11 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › MRJP 0.71 66.0 5.19e-01 98.4% 50.8%
3416404 5.1.4.240 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › MRJP 0.71 65.0 5.17e-01 98.4% 51.1%
3742310 5.1.4.38 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › ANAPC1 0.70 56.0 4.69e-01 97.3% 51.1%
3479960 5.1.4.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.69 60.0 4.79e-01 100.0% 49.0%
5081947 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.69 64.0 5.25e-01 99.5% 77.6%
3912292 5.1.4.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.69 57.0 4.62e-01 100.0% 46.9%
3241605 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.69 64.0 5.37e-01 100.0% 69.7%
5041316 5.1.4.664 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › BNR_2 0.69 64.0 5.00e-01 100.0% 49.9%
5039064 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.68 63.0 4.93e-01 99.5% 57.9%
3518523 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.68 63.0 5.46e-01 100.0% 72.6%
3823899 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.68 56.0 5.03e-01 97.9% 63.9%
5037155 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.67 63.0 4.67e-01 99.5% 57.7%
4027492 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.67 62.0 5.41e-01 97.9% 79.3%
3255575 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.67 61.0 5.02e-01 98.4% 57.2%
3779299 7579.1.1.0 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases 0.66 55.0 3.72e-01 97.9% 24.5%
3936285 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.66 62.0 5.38e-01 99.5% 76.4%
3999169 5.1.4.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.66 61.0 4.99e-01 98.4% 62.1%
5016360 5.1.5.231 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › SBBP 0.66 60.0 4.72e-01 97.9% 57.7%
5038930 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.66 61.0 4.79e-01 99.5% 57.1%
3191174 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.66 61.0 4.67e-01 99.5% 49.3%
3286900 5.1.4.29 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PD40 0.65 61.0 5.10e-01 100.0% 70.6%
5041468 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.65 60.0 4.59e-01 99.5% 58.8%
3612842 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.65 60.0 4.57e-01 100.0% 52.7%
3254115 5.1.4.56 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › NUP214 0.64 59.0 4.45e-01 99.5% 54.2%
4030008 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.64 57.0 4.71e-01 99.5% 55.9%
4028641 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.64 60.0 3.94e-01 99.5% 34.8%
5032911 5.1.4.43 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › FG-GAP_3 0.64 58.0 4.59e-01 98.4% 75.2%
3614253 5.1.4.16 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CPSF_A 0.63 57.0 4.53e-01 100.0% 48.8%
3479152 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.63 58.0 4.77e-01 99.5% 59.1%
4891036 5.1.5.92 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40, Beta-prop_EML 0.63 58.0 4.95e-01 99.5% 81.7%
2985887 5.1.4.271 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, PF30361 0.63 59.0 4.71e-01 100.0% 55.3%
3941130 5.1.4.169 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RSE1_2nd 0.62 57.0 4.65e-01 96.8% 63.6%
4304850 5.1.4.35 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Lactonase 0.62 58.0 4.70e-01 99.5% 64.4%
3728206 5.1.4.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.62 57.0 4.58e-01 97.9% 70.1%
3829679 5.1.4.224 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40_RFWD3 0.62 57.0 4.44e-01 99.5% 57.8%
2989643 5.1.3.154 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › PF30361 0.62 58.0 4.66e-01 100.0% 54.7%
3506182 5.1.5.85 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40_RFWD3 0.62 58.0 4.59e-01 99.5% 59.2%
5000550 5.1.4.43 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › FG-GAP_3 0.62 57.0 4.74e-01 99.5% 65.5%
3548894 5.1.4.320 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_LRRK2 0.62 57.0 4.54e-01 99.5% 59.7%
3181168 3939.1.1.0 alpha duplicates or obligate multimers › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain 0.62 58.0 4.38e-01 100.0% 65.0%
3872866 5.1.5.62 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_LRRK2 0.62 57.0 4.55e-01 99.5% 55.3%
3595708 5.1.4.303 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › BBS2_N, BBS2_Mid 0.62 58.0 4.38e-01 100.0% 47.4%
3462090 5.1.3.144 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › b-prop_At3g26010-like 0.62 57.0 4.58e-01 100.0% 90.8%
3336515 5.1.3.67 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.62 57.0 4.77e-01 100.0% 73.3%
1400361 5.1.3.34 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF5128 0.61 55.0 4.45e-01 96.8% 59.6%
3831470 5.1.3.67 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.61 56.0 4.87e-01 98.9% 81.1%
4890150 5.1.4.65 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › APH-like_N 0.61 56.0 4.70e-01 99.5% 77.1%
3718321 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.61 55.0 4.03e-01 97.3% 56.4%
3448857 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.61 56.0 4.51e-01 100.0% 53.8%
3430637 5.1.3.142 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_AT5G49610-like 0.60 55.0 4.69e-01 100.0% 93.5%
None 0.60 56.0 4.38e-01 100.0% 57.4%
3828029 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.60 56.0 4.54e-01 100.0% 54.8%
3736331 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.60 49.0 3.79e-01 85.6% 40.2%
4046638 5.1.3.154 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › PF30361 0.60 55.0 4.37e-01 100.0% 65.0%
3801884 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.60 55.0 4.61e-01 100.0% 69.4%
3678427 5.1.4.379 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, WD40_2 0.60 56.0 4.68e-01 100.0% 75.7%
5077760 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.60 54.0 3.98e-01 96.3% 47.3%
3425789 5.1.3.68 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF1618 0.59 54.0 4.52e-01 98.4% 75.9%
3995669 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.59 53.0 4.80e-01 94.7% 81.0%
3446031 5.1.1.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 4-bladed 0.59 54.0 5.32e-01 100.0% 92.5%
2577096 5.1.5.4 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DPPIV_N 0.59 55.0 4.63e-01 100.0% 81.8%
3820829 5.1.5.66 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › FBA_1 0.59 54.0 4.59e-01 100.0% 86.2%
3890948 5.1.4.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.58 53.0 4.09e-01 98.4% 48.8%
3233381 5.1.4.47 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PHTB1_N 0.58 54.0 4.38e-01 98.9% 62.6%
3818723 5.1.8.12 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › putative conserved lipoprotein NT01CX_1156 › FBA_3 0.58 45.0 4.71e-01 89.4% 88.6%
3990350 5.1.4.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.57 51.0 4.30e-01 96.3% 62.5%
4022249 5.1.5.4 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DPPIV_N 0.57 52.0 4.03e-01 99.5% 68.7%
5045333 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.57 22.0 3.59e-01 75.0% 97.1%
3939920 5.1.1.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 4-bladed 0.57 48.0 4.79e-01 99.5% 86.4%
D2 high residues 211-339
PDB