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YP_003331501.1

Arc-Vir

NC_013588__YP_003331501.1__SSSV7-gp18__00018

Identity

Accession:
NC_013588 ↗
Protein ID:
YP_003331501.1 ↗
Kingdom:
archaea

Quality

74.7 mean pLDDT

Taxonomy

Fuselloviridae› Alphafusellovirus› Sulfolobus_spindle-shaped_virus_7

TaxID: 693628

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 26-105
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF17639.8 best DUF5517 61.4 1.20e-16 100.0% 80.0%
CATH (35)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2iw3B01 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.76 45.0 2.91e-01 85.0% 14.2%
4errB00 1.20.58.1190 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.74 48.0 4.75e-01 86.3% 63.9%
2db2A01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.65 38.0 3.64e-01 97.5% 50.0%
7kx7A03 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.64 46.0 3.37e-01 75.0% 79.5%
2cy5A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 43.0 3.73e-01 82.5% 44.2%
1txdA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 42.0 3.67e-01 80.0% 45.5%
3qwmA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 43.0 3.72e-01 85.0% 45.7%
1oo0A00 3.30.1560.10 Alpha Beta › 2-Layer Sandwich › Mago nashi protein › Mago nashi 0.59 51.0 4.29e-01 100.0% 90.3%
3iq2A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.58 52.0 4.52e-01 100.0% 92.7%
6ro0F00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.58 50.0 4.75e-01 98.8% 80.6%
2jobA00 3.30.160.320 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.57 35.0 3.25e-01 100.0% 47.1%
3ugvA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.57 51.0 4.39e-01 100.0% 81.7%
1h91A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.57 44.0 3.41e-01 83.7% 66.1%
8jx6A02 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.56 42.0 3.90e-01 80.0% 95.1%
3i6eA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.56 50.0 4.60e-01 100.0% 85.4%
3msyA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.56 50.0 4.47e-01 100.0% 82.9%
4nyqA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 43.0 3.50e-01 83.7% 73.9%
4bgjA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.55 48.0 4.30e-01 100.0% 95.8%
2xklA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 45.0 3.66e-01 88.7% 64.4%
2zgyA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.55 42.0 3.50e-01 82.5% 97.9%
1vwxr00 3.30.390.110 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › 0.54 37.0 3.31e-01 87.5% 46.4%
3go2A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.54 47.0 4.27e-01 100.0% 78.1%
3toyA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.54 48.0 4.13e-01 100.0% 81.1%
3ddmA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.54 48.0 4.13e-01 100.0% 79.2%
2gfgA00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.54 40.0 3.00e-01 90.0% 33.0%
1nbwA04 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.54 43.0 3.65e-01 87.5% 95.5%
3lygA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 33.0 2.87e-01 100.0% 40.0%
4jn7A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.53 47.0 4.17e-01 100.0% 72.3%
3mkcA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.53 46.0 3.82e-01 98.8% 66.7%
7fisA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.52 44.0 3.03e-01 95.0% 90.8%
2l73A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.52 44.0 3.74e-01 100.0% 82.5%
3en9A03 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 33.0 3.47e-01 93.8% 72.6%
2lf2A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 41.0 3.23e-01 87.5% 91.4%
1vhzA01 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.51 34.0 2.69e-01 70.0% 74.2%
2jzlA00 2.30.60.10 Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N 0.50 44.0 4.02e-01 100.0% 94.6%
ECOD (69)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5011673 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.73 47.0 4.11e-01 97.5% 45.2%
3391728 3459.1.1.1 ↗ beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › FAIM1 0.73 34.0 3.41e-01 98.8% 42.9%
1389183 6161.1.1.1 ↗ a+b two layers › Uncharacterized virus protein A-100 › Uncharacterized virus protein A-100 › Uncharacterized virus protein A-100 › DUF5517 0.72 51.0 5.01e-01 73.8% 91.9%
5064060 896.1.1.4 ↗ a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › DDE_Tnp_IS66 0.71 39.0 4.18e-01 96.2% 61.4%
3224914 220.1.1.52 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SNX17_FERM_C 0.68 47.0 4.16e-01 75.0% 49.6%
3501861 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.67 40.0 3.60e-01 97.5% 44.8%
4394739 330.4.1.1 ↗ a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.67 40.0 4.30e-01 97.5% 68.6%
4926836 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.66 43.0 3.71e-01 96.2% 42.4%
4990321 2484.1.1.59 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA 0.66 50.0 3.57e-01 80.0% 66.5%
4087213 330.4.1.1 ↗ a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.66 40.0 4.18e-01 98.8% 65.3%
3626321 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.66 38.0 4.47e-01 98.8% 81.8%
5050929 4970.1.1.0 ↗ alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I 0.66 52.0 5.45e-01 86.3% 89.3%
5053329 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.65 56.0 4.88e-01 93.8% 88.3%
4938125 896.1.1.0 ↗ a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related 0.64 45.0 4.49e-01 90.0% 69.4%
3321360 4210.1.1.1 ↗ a+b two layers › WGR domain › WGR domain › WGR domain › WGR 0.64 52.0 5.35e-01 87.5% 94.7%
3291744 2484.1.1.4 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_H 0.63 43.0 4.37e-01 70.0% 97.5%
5076085 2484.1.1.302 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.63 51.0 3.67e-01 86.3% 37.1%
5049973 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.62 56.0 4.62e-01 100.0% 82.9%
3927305 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 43.0 3.97e-01 100.0% 54.5%
3589882 4325.1.1.7 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like › Arm-DNA-bind_4 0.61 37.0 4.49e-01 88.7% 98.0%
4534466 284.1.3.0 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.61 46.0 4.35e-01 93.8% 67.4%
4639619 2484.1.1.174 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.60 45.0 3.72e-01 80.0% 78.6%
4307149 2484.1.1.174 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.60 46.0 4.02e-01 83.7% 71.2%
4010765 2484.1.1.174 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.60 46.0 3.98e-01 82.5% 72.8%
4369846 2484.1.1.174 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.60 46.0 4.02e-01 82.5% 74.2%
4442902 2484.1.1.174 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.60 46.0 4.00e-01 83.7% 72.8%
3658323 284.1.2.1 ↗ a+b two layers › FKBP-like › FKBP-like › Conserved carboxy-terminal domain of oxidative-stress-responsive kinase 1-like kinases › OSR1_C 0.59 46.0 4.21e-01 92.5% 62.9%
3342794 284.1.3.0 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.59 45.0 4.30e-01 91.3% 71.1%
396 2.2.1.8 ↗ beta barrels › OB-fold › Bacterial enterotoxins › Bacterial enterotoxins › Pertus-S5-tox 0.59 51.0 4.83e-01 98.8% 80.6%
3512065 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.59 35.0 3.86e-01 97.5% 73.8%
3328840 284.1.2.0 ↗ a+b two layers › FKBP-like › FKBP-like › Conserved carboxy-terminal domain of oxidative-stress-responsive kinase 1-like kinases 0.59 44.0 4.37e-01 91.3% 75.3%
5004718 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.59 49.0 3.97e-01 93.8% 47.7%
3924597 330.16.1.0 ↗ a+b two layers › dsRBD-like › ODA16 N-terminal domain › ODA16 N-terminal domain 0.59 42.0 4.50e-01 91.3% 85.7%
4502261 2484.1.1.174 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.58 46.0 3.95e-01 83.7% 72.0%
3470076 861.1.1.0 ↗ a+b two layers › Mago nashi protein › Mago nashi protein › Mago nashi protein 0.58 50.0 4.28e-01 100.0% 90.7%
3307236 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.58 46.0 4.06e-01 86.3% 90.0%
4103142 284.1.3.0 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.58 47.0 4.73e-01 95.0% 85.0%
4397552 2484.1.1.174 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.58 44.0 3.82e-01 81.2% 68.8%
5073213 2484.1.1.302 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.58 47.0 3.39e-01 87.5% 35.0%
3313644 2484.1.1.67 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.58 47.0 4.25e-01 86.3% 98.1%
3514912 284.1.3.0 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.58 46.0 4.75e-01 95.0% 89.3%
3745492 2484.1.1.176 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Hexokinase_1+Hexokinase_2 0.58 48.0 2.73e-01 91.3% 33.0%
4221376 2484.1.1.174 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.58 45.0 3.90e-01 86.3% 76.2%
4982659 2484.1.1.34 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 0.57 50.0 3.33e-01 100.0% 40.6%
4505784 2484.1.1.174 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.57 45.0 3.95e-01 85.0% 76.7%
4074012 2484.1.1.174 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.57 46.0 3.94e-01 86.3% 72.0%
4200618 2484.1.1.174 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.57 45.0 4.00e-01 85.0% 77.4%
4103800 2484.1.1.174 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.57 45.0 3.97e-01 86.3% 76.7%
4600693 2484.1.1.174 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.57 46.0 3.92e-01 86.3% 72.0%
4259228 2484.1.1.174 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.57 45.0 4.09e-01 86.3% 73.6%
3497617 221.4.1.0 ↗ a+b two layers › beta-Grasp › Nudix › Nudix 0.57 38.0 2.66e-01 70.0% 59.6%
4382988 2484.1.1.174 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.57 45.0 3.92e-01 85.0% 70.0%
4206673 2484.1.1.174 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.57 45.0 3.91e-01 86.3% 72.0%
4039156 2484.1.1.174 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.56 45.0 4.06e-01 86.3% 74.5%
5046724 2484.1.1.174 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.56 45.0 3.99e-01 86.3% 78.3%
4218926 2484.1.1.174 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.56 44.0 3.88e-01 86.3% 75.8%
4098000 2484.1.1.174 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.55 44.0 3.87e-01 86.3% 66.7%
3609915 2484.8.1.1 ↗ mixed a+b and a/b › Ribonuclease H-like › Separase pseudo-protease domain (PPD) › Separase pseudo-protease domain (PPD) › Peptidase_C50 0.55 47.0 3.17e-01 95.0% 35.1%
5081878 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.54 47.0 3.10e-01 98.8% 46.4%
5076410 2484.1.1.34 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 0.54 47.0 3.09e-01 100.0% 39.2%
3734566 2484.1.1.176 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Hexokinase_1+Hexokinase_2 0.53 46.0 2.84e-01 97.5% 76.8%
2859147 7091.1.1.1 ↗ a+b complex topology › C-terminal domain of DNA repair helicase RadD › C-terminal domain of DNA repair helicase RadD › C-terminal domain of DNA repair helicase RadD › PF29401 0.53 45.0 3.72e-01 97.5% 61.3%
3991950 2484.1.1.176 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Hexokinase_1+Hexokinase_2 0.53 43.0 2.70e-01 93.8% 72.2%
3595378 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 45.0 3.77e-01 100.0% 68.7%
5049357 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 42.0 3.82e-01 98.8% 65.5%
3750853 330.1.1.18 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DSRM_DHX29 0.51 43.0 3.71e-01 100.0% 60.0%
4969909 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 43.0 3.45e-01 90.0% 52.0%
3800831 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.50 39.0 2.42e-01 83.7% 63.4%
1141950 3449.1.1.1 ↗ a+b two layers › Cpn0803 › Cpn0803 › Cpn0803 › CT_584-like 0.50 37.0 2.92e-01 78.8% 37.1%