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NC_013599.1__YP_003344902.1__Xfas53_gene12__00012
Bact-VirNC_013599.1__YP_003344902.1__Xfas53_gene12__00012
Identity
- Accession:
- NC_013599 ↗
- Kingdom:
- phage
Quality
86.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 8-63
Domain cluster:
representative
CATH (34)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1bh9B00 | 1.10.20.10 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A | 0.84 | 67.0 | 5.73e-01 | 89.3% | 55.1% |
| 4csrA00 | 1.10.20.10 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A | 0.82 | 67.0 | 5.74e-01 | 89.3% | 58.0% |
| 1ng6A01 | 1.10.1510.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical Protein Yqey; Chain: A; domain1 › Uncharacterised protein YqeY/AIM41, N-terminal domain | 0.82 | 66.0 | 5.56e-01 | 87.5% | 53.8% |
| 5y27A00 | 1.10.20.10 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A | 0.82 | 66.0 | 5.49e-01 | 89.3% | 52.0% |
| 3hr0B01 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.79 | 64.0 | 5.65e-01 | 100.0% | 62.0% |
| 4okvE00 | 6.10.140.1890 | Special › Helix non-globular › Helix Hairpins › | 0.73 | 63.0 | 6.01e-01 | 100.0% | 81.5% |
| 1cf7B00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.72 | 56.0 | 5.01e-01 | 87.5% | 73.2% |
| 4f0uA00 | 1.10.490.20 | Mainly Alpha › Orthogonal Bundle › Globin-like › Phycocyanins | 0.72 | 57.0 | 4.04e-01 | 85.7% | 31.2% |
| 8be0A01 | 3.40.91.90 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Influenza RNA-dependent RNA polymerase subunit PA, endonuclease domain | 0.71 | 54.0 | 3.77e-01 | 83.9% | 27.2% |
| 7s03A01 | 1.10.10.1450 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.69 | 49.0 | 5.17e-01 | 78.6% | 86.0% |
| 3whkA02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.69 | 44.0 | 4.08e-01 | 75.0% | 51.4% |
| 3bhqA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.69 | 62.0 | 4.16e-01 | 100.0% | 33.7% |
| 8b9zK01 | 1.10.287.3510 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.68 | 62.0 | 5.22e-01 | 100.0% | 75.8% |
| 2dznF00 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.68 | 45.0 | 4.21e-01 | 75.0% | 55.1% |
| 4oe8C00 | 1.10.8.1170 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.68 | 58.0 | 5.02e-01 | 94.6% | 60.9% |
| 1yowA00 | 1.10.565.10 | Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor | 0.67 | 59.0 | 3.91e-01 | 100.0% | 60.4% |
| 3qxzA02 | 1.10.12.10 | Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 | 0.66 | 47.0 | 4.64e-01 | 83.9% | 70.0% |
| 2aj6A00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.66 | 45.0 | 3.59e-01 | 73.2% | 34.2% |
| 2rvqC01 | 1.10.20.10 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A | 0.65 | 49.0 | 4.56e-01 | 87.5% | 64.5% |
| 4uqfG01 | 1.10.286.10 | Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › GTP cyclohydrolase I, N-terminal domain | 0.65 | 49.0 | 5.00e-01 | 92.9% | 92.3% |
| 3n5lA03 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.64 | 51.0 | 5.07e-01 | 100.0% | 87.7% |
| 2gscC00 | 1.20.1440.60 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence | 0.64 | 51.0 | 4.06e-01 | 94.6% | 43.6% |
| 1w5sA01 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.63 | 46.0 | 3.91e-01 | 75.0% | 47.7% |
| 1exaA00 | 1.10.565.10 | Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor | 0.63 | 54.0 | 3.62e-01 | 100.0% | 56.4% |
| 2w02B01 | 1.10.150.640 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › AcsD, thumb domain, helical bundle | 0.63 | 54.0 | 4.95e-01 | 96.4% | 90.5% |
| 3l8rA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.63 | 57.0 | 4.61e-01 | 100.0% | 81.4% |
| 4lctB00 | 1.25.40.570 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.61 | 53.0 | 3.20e-01 | 94.6% | 15.5% |
| 3cm0A00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.61 | 48.0 | 3.48e-01 | 92.9% | 82.6% |
| 2hmcA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.61 | 49.0 | 3.04e-01 | 87.5% | 31.5% |
| 1eqfA02 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.59 | 47.0 | 3.62e-01 | 87.5% | 45.6% |
| 2i7uA00 | 6.10.250.1010 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.58 | 46.0 | 4.48e-01 | 100.0% | 82.3% |
| 3ltoA01 | 3.30.230.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.58 | 47.0 | 3.30e-01 | 89.3% | 72.2% |
| 1hjrA00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.57 | 46.0 | 3.35e-01 | 91.1% | 86.1% |
| 1khyD00 | 1.10.1780.10 | Mainly Alpha › Orthogonal Bundle › Double Clp-N motif › Clp, N-terminal domain | 0.56 | 42.0 | 3.19e-01 | 91.1% | 33.1% |
ECOD (37)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3906103 | 101.35.1.0 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX | 0.88 | 70.0 | 6.59e-01 | 83.9% | 76.9% |
| 3534466 | 101.1.17.0 ↗ | alpha arrays › HTH › HTH › FF domain | 0.86 | 69.0 | 6.53e-01 | 85.7% | 78.5% |
| 3845947 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.82 | 61.0 | 5.96e-01 | 78.6% | 76.7% |
| 3611713 | 101.1.17.0 ↗ | alpha arrays › HTH › HTH › FF domain | 0.81 | 59.0 | 5.65e-01 | 78.6% | 78.5% |
| 4452307 | 148.1.1.4 ↗ | alpha arrays › Histone-like › Histone-related › Histone › CBFD_NFYB_HMF | 0.80 | 64.0 | 5.42e-01 | 92.9% | 52.6% |
| 3993813 | 148.1.1.9 ↗ | alpha arrays › Histone-like › Histone-related › Histone › TFIID_20kDa | 0.78 | 69.0 | 5.79e-01 | 100.0% | 77.9% |
| 3687002 | 148.1.1.7 ↗ | alpha arrays › Histone-like › Histone-related › Histone › TAF | 0.77 | 60.0 | 4.82e-01 | 89.3% | 42.6% |
| 3926031 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.77 | 58.0 | 4.83e-01 | 100.0% | 47.4% |
| 3607691 | 109.4.1.1554 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TARBP1 | 0.77 | 61.0 | 3.65e-01 | 100.0% | 13.0% |
| 3343513 | 192.8.1.268 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › CemA | 0.76 | 64.0 | 5.26e-01 | 94.6% | 54.8% |
| 3711217 | 101.7.1.0 ↗ | alpha arrays › HTH › DEK-C › DEK-C | 0.75 | 54.0 | 5.15e-01 | 76.8% | 75.4% |
| 3929002 | 5059.1.1.0 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter | 0.74 | 58.0 | 4.61e-01 | 100.0% | 42.7% |
| 3961186 | 103.9.1.0 ↗ | alpha arrays › RuvA-C › RanGAP2 N-terminal domain › RanGAP2 N-terminal domain | 0.73 | 61.0 | 5.03e-01 | 92.9% | 53.0% |
| 3412839 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.72 | 52.0 | 4.84e-01 | 80.4% | 76.0% |
| 3359312 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.68 | 50.0 | 4.51e-01 | 83.9% | 57.3% |
| 3240217 | 603.1.1.105 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF31021 | 0.68 | 59.0 | 4.93e-01 | 100.0% | 56.8% |
| 3398614 | 11.1.5.3 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › RHD_DNA_bind | 0.68 | 49.0 | 3.43e-01 | 80.4% | 46.5% |
| 3620286 | 148.1.3.213 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › MCM_bind | 0.67 | 50.0 | 4.51e-01 | 82.1% | 58.7% |
| 3988856 | 4146.1.1.1 ↗ | alpha bundles › YqgQ-like › YqgQ-like › YqgQ-like › YqgQ-like | 0.67 | 54.0 | 4.98e-01 | 100.0% | 68.9% |
| 3456399 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.66 | 45.0 | 3.31e-01 | 75.0% | 26.7% |
| 3780651 | 3602.1.1.0 ↗ | alpha bundles › Kinase suppressor of Ras 1 helical hairpin domain › Kinase suppressor of Ras 1 helical hairpin domain › Kinase suppressor of Ras 1 helical hairpin domain | 0.66 | 58.0 | 5.49e-01 | 100.0% | 81.5% |
| 3459705 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.64 | 56.0 | 3.70e-01 | 100.0% | 76.2% |
| 3287685 | 4993.1.1.1 ↗ | extended segments › Glu-tRNAGln amidotransferase C subunit › Glu-tRNAGln amidotransferase C subunit › Glu-tRNAGln amidotransferase C subunit › GatC | 0.64 | 46.0 | 3.96e-01 | 78.6% | 47.4% |
| 3269813 | 5076.1.1.1 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr | 0.64 | 54.0 | 3.39e-01 | 94.6% | 26.0% |
| 3829752 | 5076.1.1.1 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr | 0.64 | 54.0 | 3.48e-01 | 100.0% | 94.0% |
| 3823928 | 148.1.3.19 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_3 | 0.63 | 44.0 | 3.79e-01 | 75.0% | 46.7% |
| 3672945 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.62 | 53.0 | 3.54e-01 | 98.2% | 24.7% |
| 4025289 | 192.29.1.197 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › DUF4110 | 0.62 | 51.0 | 4.60e-01 | 100.0% | 78.8% |
| 3064123 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.61 | 46.0 | 4.29e-01 | 82.1% | 63.9% |
| 3708636 | 7060.1.1.1 ↗ | alpha arrays › ELMO domain › ELMO domain › ELMO domain › ELMO_CED12 | 0.61 | 56.0 | 3.57e-01 | 100.0% | 44.0% |
| 4441096 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.60 | 43.0 | 4.29e-01 | 92.9% | 71.7% |
| 3828676 | 109.4.1.1257 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2 | 0.60 | 37.0 | 3.03e-01 | 75.0% | 33.3% |
| 5061244 | 148.1.3.50 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Cdc6_lid | 0.60 | 40.0 | 3.69e-01 | 71.4% | 50.0% |
| 3361070 | 2003.1.2.102 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3, Pyr_redox_2 | 0.58 | 48.0 | 2.96e-01 | 98.2% | 54.8% |
| 4934221 | 148.1.3.20 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_2 | 0.56 | 40.0 | 3.76e-01 | 75.0% | 65.7% |
| 3645347 | 109.4.1.1295 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, TPR_24 | 0.55 | 35.0 | 2.31e-01 | 75.0% | 14.5% |
| 3961754 | 2486.1.1.1 ↗ | a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › ECH_1 | 0.53 | 41.0 | 3.08e-01 | 92.9% | 86.5% |