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NC_013599.1__YP_003344929.1__Xfas53_gene39__00039
Bact-VirNC_013599.1__YP_003344929.1__Xfas53_gene39__00039
Identity
- Accession:
- NC_013599 ↗
- Kingdom:
- phage
Quality
63.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 236-369
Domain cluster:
representative
CATH (54)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6gy8A01 | 1.20.1170.10 | Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › | 0.76 | 70.0 | 5.19e-01 | 100.0% | 92.2% |
| 1y4cA03 | 1.20.120.660 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › IL-4 antagonist (De novo design) like domain | 0.74 | 57.0 | 6.08e-01 | 97.8% | 94.7% |
| 3ajmB02 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.73 | 59.0 | 5.94e-01 | 94.0% | 84.2% |
| 2gscC00 | 1.20.1440.60 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence | 0.73 | 46.0 | 5.00e-01 | 79.9% | 76.4% |
| 1sziA02 | 1.20.120.340 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar protein FliS | 0.72 | 64.0 | 6.43e-01 | 100.0% | 94.2% |
| 2b0hA01 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.72 | 61.0 | 6.26e-01 | 94.8% | 94.5% |
| 1q90B00 | 1.20.810.10 | Mainly Alpha › Up-down Bundle › Cytochrome Bc1 Complex; Chain C › Cytochrome Bc1 Complex; Chain C | 0.72 | 62.0 | 5.33e-01 | 94.0% | 85.4% |
| 3t6gB00 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.70 | 61.0 | 6.13e-01 | 97.0% | 92.5% |
| 2l81A00 | 1.20.120.830 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Serine-rich domain | 0.69 | 65.0 | 5.89e-01 | 100.0% | 86.9% |
| 3c1yA02 | 1.20.1260.110 | Mainly Alpha › Up-down Bundle › Ferritin › DNA integrity scanning linker region | 0.69 | 50.0 | 4.90e-01 | 84.3% | 67.6% |
| 4k0dA00 | 1.20.120.1730 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.69 | 61.0 | 5.97e-01 | 100.0% | 88.8% |
| 3rfyA02 | 1.20.120.290 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Oxygen-evolving enhancer protein 3 (PsbQ), four-helix up-down bundle | 0.69 | 53.0 | 5.81e-01 | 88.8% | 100.0% |
| 2kmfA01 | 1.20.58.810 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Photosystem II Pbs27 | 0.69 | 49.0 | 5.51e-01 | 88.1% | 97.1% |
| 1r2jA03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.68 | 44.0 | 4.30e-01 | 80.6% | 59.7% |
| 6xkyA01 | 1.20.1330.10 | Mainly Alpha › Up-down Bundle › f41 fragment of flagellin, N-terminal domain › f41 fragment of flagellin, N-terminal domain | 0.67 | 62.0 | 5.51e-01 | 100.0% | 75.9% |
| 1y1uA01 | 1.20.1050.20 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › STAT transcription factor, all-alpha domain | 0.67 | 53.0 | 4.64e-01 | 82.1% | 86.2% |
| 1jmwA00 | 1.20.120.30 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Aspartate receptor, ligand-binding domain | 0.67 | 60.0 | 5.83e-01 | 100.0% | 90.4% |
| 1xzpA02 | 1.20.120.430 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › tRNA modification GTPase MnmE domain 2 | 0.67 | 60.0 | 5.62e-01 | 98.5% | 80.1% |
| 4cqiA00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.66 | 48.0 | 5.39e-01 | 75.4% | 100.0% |
| 1m56C02 | 1.20.120.80 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c oxidase, subunit III, four-helix bundle | 0.66 | 59.0 | 5.15e-01 | 97.0% | 67.3% |
| 1qsdA00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.65 | 48.0 | 5.52e-01 | 85.8% | 100.0% |
| 1u5pA01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.65 | 47.0 | 5.18e-01 | 76.9% | 92.6% |
| 1st6A01 | 1.20.120.810 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Vinculin, Vh2 four-helix bundle | 0.65 | 59.0 | 4.76e-01 | 100.0% | 80.4% |
| 2d4uB00 | 1.20.120.30 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Aspartate receptor, ligand-binding domain | 0.65 | 59.0 | 5.67e-01 | 100.0% | 91.6% |
| 2y39A00 | 1.20.120.1490 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.65 | 44.0 | 4.86e-01 | 73.9% | 85.5% |
| 1br0A00 | 1.20.58.70 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.64 | 50.0 | 5.31e-01 | 83.6% | 100.0% |
| 2wbiB03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.63 | 45.0 | 4.28e-01 | 81.3% | 62.0% |
| 1bf5A01 | 1.20.1050.20 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › STAT transcription factor, all-alpha domain | 0.63 | 52.0 | 4.86e-01 | 90.3% | 70.8% |
| 1jogA00 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.63 | 50.0 | 5.07e-01 | 85.1% | 100.0% |
| 3efzB00 | 1.20.190.20 | Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › 14-3-3 domain | 0.62 | 49.0 | 4.15e-01 | 83.6% | 67.1% |
| 5u1aL00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.62 | 50.0 | 4.67e-01 | 85.8% | 100.0% |
| 1xg2B00 | 1.20.140.40 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Invertase/pectin methylesterase inhibitor family protein | 0.62 | 47.0 | 4.50e-01 | 78.4% | 78.8% |
| 2x64A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.62 | 43.0 | 4.60e-01 | 78.4% | 83.2% |
| 1hciA04 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.61 | 48.0 | 5.13e-01 | 85.8% | 96.5% |
| 2ix5A03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.61 | 45.0 | 4.29e-01 | 82.8% | 65.8% |
| 3u64A00 | 1.25.40.920 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › TRAP transporter T-component | 0.61 | 43.0 | 3.40e-01 | 81.3% | 36.2% |
| 1rx0A03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.61 | 43.0 | 4.14e-01 | 82.1% | 63.2% |
| 3p4tA03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.59 | 43.0 | 4.18e-01 | 82.1% | 67.3% |
| 2nwbA02 | 1.20.58.480 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.59 | 45.0 | 3.79e-01 | 81.3% | 67.5% |
| 2ycdA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.58 | 40.0 | 4.21e-01 | 78.4% | 80.3% |
| 1dn1B00 | 1.20.58.70 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.58 | 49.0 | 4.13e-01 | 91.0% | 85.6% |
| 3kkdA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.57 | 45.0 | 4.02e-01 | 85.1% | 88.4% |
| 1to9A00 | 1.20.910.10 | Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like | 0.57 | 42.0 | 3.61e-01 | 78.4% | 68.4% |
| 2qvaA01 | 1.20.58.190 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 1 | 0.55 | 42.0 | 4.34e-01 | 91.0% | 84.5% |
| 3pivA00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.55 | 47.0 | 4.48e-01 | 91.8% | 96.2% |
| 4ip8A00 | 1.10.132.110 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Serum amyloid A protein | 0.55 | 33.0 | 3.74e-01 | 85.1% | 76.2% |
| 3qxlA00 | 1.10.840.10 | Mainly Alpha › Orthogonal Bundle › Son of Sevenless (SoS) protein; Chain S, domain 2 › Ras guanine-nucleotide exchange factors catalytic domain | 0.55 | 44.0 | 3.68e-01 | 86.6% | 82.9% |
| 1c17M00 | 1.20.120.220 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › ATP synthase, F0 complex, subunit A | 0.53 | 46.0 | 4.59e-01 | 99.3% | 92.3% |
| 4oydB00 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.53 | 42.0 | 4.53e-01 | 86.6% | 97.4% |
| 2q24A00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.53 | 41.0 | 3.82e-01 | 82.8% | 79.2% |
| 5c4yA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.52 | 39.0 | 3.89e-01 | 76.9% | 99.3% |
| 3ljbA00 | 1.20.120.1240 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Dynamin, middle domain | 0.52 | 44.0 | 3.80e-01 | 93.3% | 72.1% |
| 2fq4A02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.52 | 40.0 | 3.98e-01 | 91.0% | 79.6% |
| 3frrA00 | 1.20.1260.60 | Mainly Alpha › Up-down Bundle › Ferritin › Vacuolar protein sorting-associated protein Ist1 | 0.51 | 43.0 | 3.86e-01 | 91.0% | 88.7% |
ECOD (67)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3451847 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.77 | 71.0 | 6.40e-01 | 100.0% | 94.4% |
| 4928655 | 5069.1.1.6 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › COX15-CtaA | 0.75 | 65.0 | 6.22e-01 | 90.3% | 89.3% |
| 3676218 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.74 | 67.0 | 5.97e-01 | 97.8% | 95.7% |
| 3801950 | 3755.4.1.0 ↗ | alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain | 0.74 | 62.0 | 5.25e-01 | 100.0% | 57.1% |
| 3840081 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.74 | 68.0 | 6.72e-01 | 100.0% | 95.8% |
| 3806507 | 3684.1.1.0 ↗ | alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like | 0.74 | 68.0 | 5.60e-01 | 100.0% | 80.4% |
| 3061928 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.74 | 68.0 | 6.00e-01 | 100.0% | 91.0% |
| 3495945 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.73 | 57.0 | 6.09e-01 | 93.3% | 95.7% |
| 3826671 | 5069.1.1.7 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Cytochrom_B561 | 0.73 | 68.0 | 5.81e-01 | 100.0% | 70.2% |
| 4332370 | 5069.1.1.0 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes | 0.73 | 66.0 | 5.51e-01 | 98.5% | 64.4% |
| 3909940 | 601.39.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › Enhancer of filamentation 1 › Enhancer of filamentation 1 › Serine_rich | 0.73 | 64.0 | 5.91e-01 | 94.8% | 85.9% |
| 3291574 | 192.29.1.248 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › PF27150 | 0.73 | 60.0 | 6.24e-01 | 100.0% | 96.0% |
| 3964598 | 192.29.1.104 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › DUF4149 | 0.72 | 65.0 | 6.33e-01 | 95.5% | 93.1% |
| 5040635 | 601.1.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin | 0.72 | 54.0 | 5.75e-01 | 90.3% | 90.4% |
| 3807101 | 3684.1.1.20 ↗ | alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › DUF4079 | 0.71 | 64.0 | 6.25e-01 | 95.5% | 93.1% |
| 3212004 | 601.4.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains | 0.71 | 63.0 | 5.86e-01 | 97.8% | 78.8% |
| 3203851 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.70 | 60.0 | 5.56e-01 | 90.3% | 84.2% |
| 4001575 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.70 | 66.0 | 6.19e-01 | 100.0% | 86.1% |
| 4383443 | 192.29.1.165 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › PF29336 | 0.70 | 61.0 | 6.09e-01 | 94.8% | 96.4% |
| 3980115 | 5069.1.1.15 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Cytochrom_C_asm | 0.70 | 61.0 | 5.99e-01 | 94.0% | 93.0% |
| 3628277 | 604.1.1.173 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Mitofilin | 0.70 | 58.0 | 5.73e-01 | 87.3% | 87.9% |
| 3700263 | 601.11.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Mannose-6-phosphate receptor binding protein 1 (Tip47), C-terminal domain › Mannose-6-phosphate receptor binding protein 1 (Tip47), C-terminal domain | 0.69 | 60.0 | 5.72e-01 | 92.5% | 91.0% |
| 3722752 | 5069.1.1.4 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Ferric_reduct | 0.69 | 61.0 | 4.97e-01 | 94.0% | 58.3% |
| 3653697 | 5069.1.1.7 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Cytochrom_B561 | 0.69 | 60.0 | 5.08e-01 | 94.0% | 70.0% |
| 3206572 | 192.29.1.165 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › PF29336 | 0.69 | 61.0 | 6.08e-01 | 96.3% | 95.0% |
| 3212222 | 5069.1.1.7 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Cytochrom_B561 | 0.69 | 62.0 | 5.11e-01 | 98.5% | 60.4% |
| 3444036 | 601.1.1.91 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › DUF1218 | 0.69 | 57.0 | 5.94e-01 | 94.0% | 94.4% |
| 1923803 | 1120.1.1.1 ↗ | alpha bundles › KSHV ORF49 protein › KSHV ORF49 protein › KSHV ORF49 protein › Herpes_BBRF1 | 0.69 | 57.0 | 4.45e-01 | 88.8% | 89.7% |
| 3926240 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.69 | 64.0 | 4.99e-01 | 100.0% | 53.3% |
| 3570235 | 5069.1.1.7 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Cytochrom_B561 | 0.69 | 59.0 | 4.95e-01 | 91.8% | 65.0% |
| 3519442 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.69 | 63.0 | 5.97e-01 | 98.5% | 89.7% |
| 3173547 | 603.1.1.17 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › SNARE | 0.68 | 54.0 | 4.43e-01 | 82.8% | 85.5% |
| 5061688 | 5069.1.1.7 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Cytochrom_B561 | 0.68 | 62.0 | 6.10e-01 | 97.8% | 94.3% |
| 3402871 | 5069.1.1.7 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Cytochrom_B561 | 0.68 | 59.0 | 4.98e-01 | 93.3% | 60.9% |
| 4456477 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.68 | 55.0 | 4.99e-01 | 85.8% | 79.4% |
| 3396505 | 5069.1.1.7 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Cytochrom_B561 | 0.67 | 59.0 | 4.99e-01 | 93.3% | 61.9% |
| 3706157 | 601.15.1.2 ↗ | alpha bundles › Four-helical up-and-down bundle › Proteasome activator reg(alpha) › Proteasome activator reg(alpha) › PA28_C | 0.67 | 60.0 | 5.00e-01 | 97.8% | 87.2% |
| 3633501 | 5069.1.1.4 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Ferric_reduct | 0.67 | 61.0 | 4.71e-01 | 99.3% | 85.1% |
| 3864448 | 192.29.1.7 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › TMEM192 | 0.66 | 61.0 | 5.60e-01 | 100.0% | 89.4% |
| 3876247 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.66 | 51.0 | 5.43e-01 | 81.3% | 95.8% |
| 4458494 | 3684.1.1.23 ↗ | alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › CA109-like | 0.66 | 59.0 | 5.46e-01 | 100.0% | 94.9% |
| 3977955 | 601.4.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains › TarH | 0.66 | 57.0 | 5.57e-01 | 97.0% | 86.9% |
| 3967683 | 601.4.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains | 0.65 | 59.0 | 5.68e-01 | 100.0% | 92.7% |
| 4024537 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.65 | 52.0 | 4.50e-01 | 83.6% | 80.5% |
| 4942916 | 601.12.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › Nickel-containing superoxide dismutase, NiSOD › Nickel-containing superoxide dismutase, NiSOD › Sod_Ni | 0.65 | 57.0 | 5.42e-01 | 94.8% | 93.5% |
| None | — | 0.64 | 52.0 | 4.20e-01 | 85.8% | 46.3% | |
| 3401257 | 192.15.1.92 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › TRC8_N | 0.64 | 54.0 | 5.51e-01 | 95.5% | 93.1% |
| 3781233 | 604.12.1.119 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › PF29060 | 0.64 | 52.0 | 5.32e-01 | 85.8% | 92.2% |
| None | — | 0.64 | 56.0 | 4.67e-01 | 93.3% | 92.9% | |
| 3673192 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.64 | 57.0 | 5.24e-01 | 97.0% | 85.9% |
| 3485540 | 603.1.1.1 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin | 0.63 | 53.0 | 4.78e-01 | 88.1% | 70.3% |
| 3418792 | 3755.3.1.400 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › NET2A_C | 0.63 | 51.0 | 4.85e-01 | 87.3% | 96.2% |
| 3535223 | 604.37.1.2 ↗ | alpha bundles › Spectrin repeat-like › Legionella effector Lem22 › Legionella effector Lem22 › CCDC136_middle | 0.62 | 50.0 | 4.76e-01 | 85.1% | 96.1% |
| 3332286 | 3684.1.1.2 ↗ | alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › BPS1 | 0.62 | 56.0 | 4.70e-01 | 100.0% | 75.2% |
| 3228858 | 603.1.1.1 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin | 0.62 | 57.0 | 4.87e-01 | 95.5% | 98.0% |
| 3373206 | 3684.1.1.0 ↗ | alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like | 0.62 | 56.0 | 4.29e-01 | 100.0% | 71.1% |
| 4556484 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.62 | 48.0 | 4.95e-01 | 85.8% | 87.2% |
| 3899930 | 603.1.1.1 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin | 0.62 | 52.0 | 4.46e-01 | 88.1% | 95.0% |
| 5079912 | 141.1.1.3 ↗ | alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › UbiA | 0.61 | 55.0 | 4.20e-01 | 97.0% | 85.3% |
| 3896580 | 603.1.1.97 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin, SNARE | 0.60 | 55.0 | 4.60e-01 | 100.0% | 96.0% |
| 3932846 | 603.1.1.1 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin | 0.60 | 51.0 | 4.45e-01 | 92.5% | 95.1% |
| 3419666 | 601.19.1.26 ↗ | alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › DUF632 | 0.59 | 54.0 | 4.93e-01 | 100.0% | 93.1% |
| 3927056 | 603.1.1.1 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin | 0.57 | 49.0 | 4.25e-01 | 93.3% | 92.9% |
| 3591338 | 150.1.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin | 0.56 | 44.0 | 3.88e-01 | 85.1% | 74.1% |
| 3243709 | 603.1.1.97 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin, SNARE | 0.55 | 45.0 | 3.74e-01 | 86.6% | 84.4% |
| 3211362 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.54 | 44.0 | 4.50e-01 | 88.8% | 89.2% |
| 2417899 | 5012.1.1.1 ↗ | alpha complex topology › CRISPR-associated endonuclease C2c1 second helical domain › CRISPR-associated endonuclease C2c1 second helical domain › CRISPR-associated endonuclease C2c1 second helical domain › C2c1_helical | 0.54 | 48.0 | 4.58e-01 | 95.5% | 86.4% |
D2
medium
residues 4-135
Domain cluster:
representative
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2d2sA01 | 1.20.58.1210 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Exo84p, N-terminal helical domain | 0.77 | 42.0 | 4.48e-01 | 81.8% | 60.3% |
| 1fioA00 | 1.20.58.70 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.72 | 52.0 | 4.55e-01 | 74.2% | 89.5% |
| 1t98A02 | 1.20.58.590 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Chromosome partition protein MukF, middle domain | 0.69 | 48.0 | 4.47e-01 | 70.5% | 95.1% |
| 5z7qA00 | 1.20.1330.10 | Mainly Alpha › Up-down Bundle › f41 fragment of flagellin, N-terminal domain › f41 fragment of flagellin, N-terminal domain | 0.61 | 49.0 | 4.44e-01 | 84.1% | 82.4% |
| 3nyjA00 | 1.20.120.770 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Amyloid precursor protein, E2 domain | 0.60 | 45.0 | 4.04e-01 | 78.8% | 82.3% |
| 2nwbA02 | 1.20.58.480 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.59 | 42.0 | 3.48e-01 | 72.7% | 97.9% |
| 7shlA02 | 1.20.1310.10 | Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats | 0.59 | 39.0 | 4.05e-01 | 73.5% | 71.3% |
| 5j1hA01 | 1.20.58.1060 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.59 | 52.0 | 4.67e-01 | 94.7% | 90.1% |
| 4adnA01 | 1.20.1280.250 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.59 | 36.0 | 4.38e-01 | 74.2% | 94.1% |
| 1w99A01 | 1.20.190.10 | Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › Pesticidal crystal protein, N-terminal domain | 0.56 | 40.0 | 3.66e-01 | 72.7% | 70.5% |
| 2q12A00 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.54 | 41.0 | 3.35e-01 | 100.0% | 43.8% |
| 3caxA01 | 1.20.120.520 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › nmb1532 protein domain like | 0.53 | 42.0 | 3.51e-01 | 82.6% | 59.9% |
| 2b5uA02 | 1.10.287.620 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix Hairpins | 0.53 | 38.0 | 3.61e-01 | 75.0% | 74.5% |
| 3zc0D00 | 1.20.58.2140 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.52 | 49.0 | 4.29e-01 | 100.0% | 95.7% |
| 2h1jA00 | 1.10.1370.30 | Mainly Alpha › Orthogonal Bundle › Neurolysin; domain 3 › | 0.52 | 41.0 | 2.67e-01 | 81.1% | 60.4% |
| 3r6nA02 | 1.20.58.1060 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.52 | 42.0 | 3.95e-01 | 83.3% | 76.8% |
| 1bbhA00 | 1.20.120.10 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c/b562 | 0.51 | 39.0 | 3.98e-01 | 80.3% | 100.0% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5072280 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.68 | 39.0 | 3.27e-01 | 97.0% | 34.9% |
| 3592136 | 603.1.1.17 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › SNARE | 0.67 | 48.0 | 4.08e-01 | 74.2% | 77.7% |
| 5078219 | 3684.1.1.0 ↗ | alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like | 0.66 | 49.0 | 4.46e-01 | 76.5% | 63.4% |
| 3934585 | 3755.3.1.465 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › KIF21A | 0.62 | 38.0 | 3.69e-01 | 81.8% | 52.7% |
| 3849660 | 11.2.1.25 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › PL48 | 0.62 | 38.0 | 3.89e-01 | 82.6% | 61.5% |
| 3950985 | 138.1.1.3 ↗ | alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNApol3-delta_C | 0.59 | 44.0 | 3.99e-01 | 75.8% | 80.0% |
| 3715787 | 603.1.1.98 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › SNARE, Syntaxin_2 | 0.58 | 44.0 | 3.70e-01 | 79.5% | 76.1% |
| 3904356 | 3755.3.1.9 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › SH3BP5 | 0.58 | 41.0 | 3.46e-01 | 81.1% | 45.9% |
| 3697355 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.56 | 39.0 | 3.74e-01 | 72.0% | 67.7% |
| 4780326 | 601.19.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein | 0.56 | 40.0 | 3.47e-01 | 73.5% | 74.5% |
| 3970616 | 601.4.1.3 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains › 4HB_MCP_1 | 0.55 | 46.0 | 4.45e-01 | 86.4% | 90.3% |
| 3612163 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.55 | 45.0 | 3.71e-01 | 87.1% | 83.8% |
| 3195360 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.55 | 36.0 | 3.60e-01 | 89.4% | 62.1% |
| 3396168 | 633.2.1.4 ↗ | alpha bundles › Bromodomain-like › Carnobacteriocin B2 immunity protein › Carnobacteriocin B2 immunity protein › Piezo_TM1-24 | 0.55 | 35.0 | 3.40e-01 | 75.8% | 57.2% |
| 3738901 | 109.10.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › Translin › Translin › Translin | 0.55 | 49.0 | 4.22e-01 | 100.0% | 82.8% |
| 3733140 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.54 | 34.0 | 3.27e-01 | 93.2% | 54.8% |
| 3841137 | 109.4.1.662 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MEKK4_N | 0.53 | 41.0 | 3.52e-01 | 84.1% | 77.7% |
| 3259375 | 621.1.1.0 ↗ | alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain | 0.50 | 38.0 | 3.77e-01 | 78.0% | 80.0% |