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NC_013643.1__YP_003347304.1__EP-phiFL2A_gp13__00013
Bact-VirNC_013643.1__YP_003347304.1__EP-phiFL2A_gp13__00013
Identity
- Accession:
- NC_013643 ↗
- Kingdom:
- phage
Quality
87.6
mean pLDDT
Taxonomy
TaxID: 673835
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 3-104
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5vbfA01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.63 | 40.0 | 2.84e-01 | 78.4% | 22.2% |
| 6b4rA01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.63 | 42.0 | 3.07e-01 | 80.4% | 26.0% |
| 4h7nA01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.61 | 39.0 | 2.84e-01 | 81.4% | 23.7% |
| 1uxtA01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.57 | 37.0 | 2.76e-01 | 81.4% | 24.9% |
| 1el6A03 | 3.90.1160.10 | Alpha Beta › Alpha-Beta Complex › Baseplate Structural Protein Gp11; Chain: A, domain 3 › Baseplate structural protein gp11, finger domain | 0.55 | 31.0 | 3.10e-01 | 76.5% | 50.5% |
| 2p92A00 | 3.30.70.1490 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cysteine protease Prp | 0.54 | 33.0 | 3.43e-01 | 72.5% | 65.3% |
| 6s9vB01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.53 | 44.0 | 3.06e-01 | 91.2% | 58.7% |
| 2qyuA02 | 1.25.40.300 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Putative secreted effector protein | 0.50 | 42.0 | 3.45e-01 | 92.2% | 94.4% |
ECOD (20)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3198044 | 604.6.1.0 ↗ | alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain | 0.58 | 35.0 | 3.67e-01 | 77.5% | 64.2% |
| 3285760 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.56 | 41.0 | 3.47e-01 | 77.5% | 92.8% |
| 3604277 | 327.11.2.82 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › PF27275 | 0.54 | 28.0 | 3.22e-01 | 70.6% | 68.0% |
| 3915878 | 3922.1.1.65 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › PLC-beta_C | 0.54 | 30.0 | 2.34e-01 | 100.0% | 25.7% |
| 5031648 | 101.1.2.31 ↗ | alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha | 0.53 | 41.0 | 3.49e-01 | 81.4% | 92.7% |
| 3596671 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.53 | 44.0 | 3.14e-01 | 92.2% | 42.8% |
| 4221024 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 39.0 | 3.13e-01 | 78.4% | 92.7% |
| 4970576 | 375.1.1.179 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha | 0.52 | 38.0 | 3.14e-01 | 75.5% | 84.4% |
| 3792565 | 223.2.1.10 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Gtr1_RagA | 0.52 | 36.0 | 3.67e-01 | 71.6% | 72.0% |
| 3488429 | 375.1.1.179 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha | 0.52 | 38.0 | 3.10e-01 | 76.5% | 84.9% |
| 4645846 | 375.1.1.179 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha | 0.52 | 40.0 | 3.37e-01 | 81.4% | 93.5% |
| 4974744 | 375.1.1.179 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha | 0.52 | 38.0 | 3.18e-01 | 77.5% | 86.3% |
| 4561147 | 101.1.2.31 ↗ | alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha | 0.51 | 38.0 | 3.52e-01 | 77.5% | 84.4% |
| 5011468 | 101.1.2.31 ↗ | alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha | 0.51 | 37.0 | 3.50e-01 | 76.5% | 92.8% |
| 4027270 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.51 | 39.0 | 3.09e-01 | 84.3% | 74.6% |
| 5075111 | 101.1.2.31 ↗ | alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha | 0.51 | 38.0 | 3.38e-01 | 78.4% | 63.2% |
| 3735521 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.51 | 34.0 | 3.19e-01 | 70.6% | 86.7% |
| 4054285 | 5.1.4.139 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40_2 | 0.50 | 38.0 | 2.49e-01 | 81.4% | 33.4% |
| 3475905 | 2.9.1.1 ↗ | beta barrels › OB-fold › RNB domain-like › RNB domain-like › RNB | 0.50 | 38.0 | 2.45e-01 | 78.4% | 49.8% |
| 3389720 | 2.9.1.1 ↗ | beta barrels › OB-fold › RNB domain-like › RNB domain-like › RNB | 0.50 | 37.0 | 2.46e-01 | 77.5% | 51.2% |