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NC_013644.1__YP_003347371.1__EP-phiFL1A_gp17__00017

Bact-Vir

NC_013644.1__YP_003347371.1__EP-phiFL1A_gp17__00017

Identity

Accession:
NC_013644 ↗
Kingdom:
phage

Quality

83.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Enterococcus_phage_phiFL4A

TaxID: 673839

Cluster

View cluster (33 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 48-101
PDB
Domain cluster: representative
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4in3B00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.84 58.0 3.25e-01 72.2% 8.1%
1e1dA02 1.20.1270.20 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.83 63.0 5.39e-01 81.5% 88.1%
5y27A00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.79 62.0 5.02e-01 83.3% 53.1%
2bskB00 1.10.287.810 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Mitochondrial import inner membrane translocase subunit tim13 like domains 0.78 67.0 6.30e-01 94.4% 98.5%
3d36B02 1.10.287.130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain 0.78 52.0 5.03e-01 70.4% 68.9%
2yqzA02 1.10.8.900 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.71 49.0 4.53e-01 72.2% 91.2%
7qx4A01 1.20.190.10 Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › Pesticidal crystal protein, N-terminal domain 0.71 61.0 3.94e-01 96.3% 71.8%
1a3qA01 2.60.40.340 Mainly Beta › Sandwich › Immunoglobulin-like › Rel homology domain (RHD), DNA-binding domain 0.69 50.0 3.48e-01 77.8% 27.4%
2nnwA02 1.10.287.4070 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.68 60.0 4.57e-01 100.0% 87.4%
2gf4A00 1.20.1270.110 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Uncharacterised protein family UPF0058 0.68 60.0 5.11e-01 100.0% 70.5%
4okvE00 6.10.140.1890 Special › Helix non-globular › Helix Hairpins › 0.67 57.0 5.38e-01 96.3% 81.5%
2ljwA00 3.30.428.40 Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › Protein of unknown function DUF3067 0.65 50.0 4.06e-01 83.3% 95.2%
3wnkA02 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.64 43.0 2.60e-01 70.4% 76.9%
3keyA01 1.10.10.1080 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Stn1, N-terminal wHTH domain 0.63 48.0 4.09e-01 81.5% 83.9%
2iqtA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.62 46.0 2.92e-01 81.5% 96.6%
1dmhA00 2.60.130.10 Mainly Beta › Sandwich › Protocatechuate 3,4-Dioxygenase, subunit A › Aromatic compound dioxygenase 0.60 45.0 2.85e-01 87.0% 14.2%
1x9fD00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.58 44.0 3.30e-01 85.2% 35.7%
1wbeA01 1.10.3520.10 Mainly Alpha › Orthogonal Bundle › Glycolipid transfer protein, GLTP › Glycolipid transfer protein 0.57 49.0 3.44e-01 100.0% 49.7%
2zs0A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.55 47.0 3.44e-01 94.4% 35.7%
1l3aA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.55 46.0 3.30e-01 96.3% 57.8%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3609374 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.77 57.0 4.53e-01 79.6% 46.4%
4626442 7010.1.1.0 ↗ alpha arrays › Activation-binding domain of RNA polymerase II mediator › Activation-binding domain of RNA polymerase II mediator › Activation-binding domain of RNA polymerase II mediator 0.77 60.0 5.82e-01 85.2% 90.0%
3742760 4120.1.1.1 ↗ few secondary structure elements › Tim10/DDP › Tim10/DDP › Tim10/DDP › zf-Tim10_DDP 0.76 69.0 5.89e-01 100.0% 78.6%
3647944 148.1.1.4 ↗ alpha arrays › Histone-like › Histone-related › Histone › CBFD_NFYB_HMF 0.76 63.0 4.97e-01 88.9% 51.4%
3736214 148.1.1.4 ↗ alpha arrays › Histone-like › Histone-related › Histone › CBFD_NFYB_HMF 0.75 62.0 4.72e-01 88.9% 45.0%
3699397 4120.1.1.1 ↗ few secondary structure elements › Tim10/DDP › Tim10/DDP › Tim10/DDP › zf-Tim10_DDP 0.74 64.0 6.06e-01 98.1% 96.9%
5079472 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.73 56.0 3.50e-01 83.3% 25.4%
3884457 4120.1.1.1 ↗ few secondary structure elements › Tim10/DDP › Tim10/DDP › Tim10/DDP › zf-Tim10_DDP 0.72 64.0 5.48e-01 100.0% 80.0%
3782747 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.71 49.0 4.32e-01 72.2% 48.8%
4034612 1076.1.1.1 ↗ alpha bundles › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Rce1-like 0.66 55.0 3.67e-01 94.4% 24.0%
3251029 7512.1.1.10 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_28 0.66 52.0 3.43e-01 88.9% 29.6%
3249199 375.8.1.0 ↗ few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta 0.65 55.0 3.89e-01 100.0% 31.4%
3934989 193.1.1.0 ↗ alpha bundles › CH domain-like › Calponin-homology domain-like › Calponin-homology domain-like 0.65 45.0 3.54e-01 72.2% 80.9%
4213361 602.1.1.3 ↗ alpha arrays › L-aspartase middle domain-like › L-aspartase middle domain-like › L-aspartase middle domain-like › Lyase_aromatic 0.64 56.0 3.45e-01 100.0% 42.9%
4058985 106.1.1.1 ↗ alpha arrays › Globin-like › Globin-like › Globin-like › Globin 0.64 52.0 3.93e-01 92.6% 47.1%
2843119 148.1.1.0 ↗ alpha arrays › Histone-like › Histone-related › Histone 0.64 52.0 4.41e-01 94.4% 54.3%
4025289 192.29.1.197 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › DUF4110 0.62 53.0 4.65e-01 100.0% 69.4%
3208308 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.60 53.0 3.60e-01 98.1% 29.2%