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NC_013645.1__YP_003347410.1__SP-Abc2_gp01__00001

Bact-Vir

Identity

Accession:: NC_013645 ↗
Kingdom:: phage

Quality

91.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Aliceevansviridae› Moineauvirus› Streptococcus_phage_Abc2

TaxID: 2919544

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-102

PDB

Domain cluster: rep: KY697807.1__ARB06992.1__X__00003__D146-237

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05119.18 best	Terminase_4	59.0	7.20e-16	86.3%	73.5%

CATH (8)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2ab5B01	3.10.28.10	Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases	0.61	27.0	2.50e-01	78.4%	32.0%
2zdiC00	1.10.287.370	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.59	49.0	4.28e-01	87.3%	98.0%
1fxkB00	1.10.287.370	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.57	46.0	4.55e-01	91.2%	78.9%
4k1pE00	1.20.1170.10	Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; ›	0.57	46.0	3.30e-01	89.2%	69.8%
2ychA02	3.30.1490.300	Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 ›	0.55	20.0	2.54e-01	71.6%	50.0%
6l3tA01	1.20.1440.80	Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Gap junction channel protein cysteine-rich domain	0.55	44.0	3.57e-01	87.3%	45.2%
2p92A00	3.30.70.1490	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cysteine protease Prp	0.53	35.0	3.68e-01	72.5%	72.6%
3tgxB00	1.20.1250.70	Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › Interleukin-15/Interleukin-21	0.50	36.0	3.44e-01	73.5%	71.3%

ECOD (21)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3420427	2484.1.1.1 ↗	mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70	0.68	29.0	2.71e-01	79.4%	31.5%
3791945	5054.1.1.2 ↗	alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans	0.61	43.0	3.22e-01	81.4%	32.4%
3976770	3747.1.1.1 ↗	a+b two layers › Flagellar hook protein FlgE D0 domain › Flagellar hook protein FlgE D0 domain › Flagellar hook protein FlgE D0 domain › Flg_bb_rod	0.59	45.0	4.62e-01	80.4%	100.0%
5069467	192.2.1.2 ↗	alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin	0.58	49.0	4.27e-01	87.3%	90.3%
3974732	3747.1.1.3 ↗	a+b two layers › Flagellar hook protein FlgE D0 domain › Flagellar hook protein FlgE D0 domain › Flagellar hook protein FlgE D0 domain › Flg_bbr_C	0.57	46.0	4.47e-01	84.3%	100.0%
3215999	5001.1.1.111 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1, 7TM_GPCR_Srw	0.57	44.0	2.97e-01	81.4%	32.9%
4029192	101.1.2.236 ↗	alpha arrays › HTH › HTH › winged helix domain › POLR3C_WHD	0.57	40.0	2.70e-01	76.5%	19.7%
3843693	3937.1.1.1 ↗	alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Connexin	0.57	45.0	3.67e-01	86.3%	44.0%
4946547	604.1.1.0 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat	0.57	35.0	3.32e-01	79.4%	50.8%
3472642	3937.1.1.2 ↗	alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Innexin	0.56	51.0	3.39e-01	100.0%	38.3%
4016124	192.29.1.148 ↗	alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › DUF3433	0.56	42.0	3.49e-01	80.4%	45.0%
3220241	5001.1.1.1 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1	0.55	44.0	2.98e-01	86.3%	43.3%
3198044	604.6.1.0 ↗	alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain	0.55	38.0	3.95e-01	70.6%	82.1%
3522272	1075.1.2.20 ↗	alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › DC_STAMP	0.54	37.0	3.35e-01	70.6%	100.0%
3892131	5001.1.1.1 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1	0.54	42.0	2.92e-01	82.4%	34.9%
3970378	223.1.1.0 ↗	a+b three layers › Profilin-like › sensor domains › sensor domains	0.53	41.0	3.53e-01	83.3%	90.0%
3170708	632.1.1.6 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain › Pho88	0.52	38.0	3.44e-01	83.3%	54.5%
3350168	295.1.1.0 ↗	a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain	0.52	38.0	3.57e-01	75.5%	83.3%
3636298	5001.1.1.6 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Bac_rhodopsin	0.50	39.0	3.03e-01	84.3%	48.3%
4976516	304.19.1.0 ↗	a+b two layers › Alpha-beta plaits › eIF-2-alpha, C-terminal domain › eIF-2-alpha, C-terminal domain	0.50	32.0	3.46e-01	73.5%	74.4%
4595166	5076.2.1.0 ↗	alpha complex topology › Mitochondrial ADP/ATP carrier-like › Putative sulfate permease CysZ › Putative sulfate permease CysZ	0.50	38.0	3.02e-01	82.4%	92.4%