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NC_013692.1__YP_003358437.1__PP-LIT1_gp40__00040

Bact-Vir

NC_013692.1__YP_003358437.1__PP-LIT1_gp40__00040

Identity

Accession:
NC_013692 ↗
Kingdom:
phage

Quality

62.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Schitoviridae› Litunavirus› Pseudomonas_phage_LIT1

TaxID: 655098

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 24-77
PDB
Domain cluster: rep: MZ605292.1__QYW06523.1__uan_111__00111__D2-52
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6u7tA03 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.78 39.0 2.95e-01 72.2% 22.3%
1qhdA02 1.10.1350.10 Mainly Alpha › Orthogonal Bundle › Viral capsid alpha domain › Viral capsid alpha domain 0.59 43.0 3.00e-01 85.2% 52.4%
1l1lA03 3.90.1390.10 Alpha Beta › Alpha-Beta Complex › b-12 dependent (class ii) ribonucleotide reductase, chain A, domain 3 › b-12 dependent (class ii) ribonucleotide reductase, chain A, domain 3 0.59 46.0 3.92e-01 88.9% 86.2%
5ja1B00 3.90.820.10 Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id 0.58 45.0 4.35e-01 94.4% 84.8%
3zqmA00 6.10.140.2160 Special › Helix non-globular › Helix Hairpins › 0.58 39.0 3.83e-01 70.4% 81.4%
3ulbA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 42.0 3.67e-01 77.8% 86.7%
3d4rE01 2.40.128.400 Mainly Beta › Beta Barrel › Lipocalin › 0.56 39.0 3.46e-01 74.1% 70.2%
2jrjA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.55 30.0 3.09e-01 98.1% 50.0%
3doaA03 3.40.970.40 Alpha Beta › 3-Layer(aba) Sandwich › Ribonuclease HI; Chain A › fibrinogen binding protein from staphylococcus aureus domain like 0.55 38.0 3.96e-01 75.9% 100.0%
1wxrA03 3.30.160.280 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.52 39.0 3.49e-01 81.5% 69.7%
4j7hA02 3.90.79.40 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › EvaA sugar 2,3-dehydratase subunit 0.52 37.0 2.73e-01 77.8% 68.5%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2673942 223.1.1.3 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › GAF 0.61 44.0 3.15e-01 79.6% 77.2%
4969647 301.1.1.2 ↗ a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.61 44.0 3.54e-01 79.6% 38.2%
4944445 3769.1.1.0 ↗ 0.59 43.0 4.49e-01 81.5% 97.8%
4056101 810.1.1.2 ↗ a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › GGACT 0.58 40.0 3.33e-01 74.1% 86.7%
1033457 3218.1.1.0 ↗ a+b duplicates or obligate multimers › small terminase oligomerization domain › small terminase oligomerization domain › small terminase oligomerization domain 0.58 39.0 3.85e-01 70.4% 82.8%
4017999 2003.1.2.29 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › NAD_binding_8 0.57 43.0 2.55e-01 85.2% 65.2%
3907976 377.9.1.8 ↗ few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › zf-FCS 0.57 31.0 3.34e-01 77.8% 62.2%
4578190 2002.1.1.42 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › A_deaminase,A_deaminase_N 0.54 41.0 2.41e-01 83.3% 82.4%
3811947 2484.1.1.67 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.54 36.0 2.92e-01 88.9% 35.2%
4675823 377.1.1.3 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › TK 0.53 38.0 3.65e-01 90.7% 66.2%
3382260 10.12.1.40 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › JmjC_2 0.52 38.0 2.43e-01 81.5% 41.9%
3276769 5.1.4.262 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_CAF1B_HIR1 0.51 36.0 2.24e-01 79.6% 91.0%
3627588 267.1.1.3 ↗ a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.51 40.0 2.69e-01 88.9% 36.0%
3412126 243.3.1.53 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › CHGN 0.50 39.0 3.27e-01 87.0% 90.0%
3922996 198.1.1.4 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › DUF3456 0.50 38.0 3.05e-01 88.9% 95.2%