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NC_013696.1__YP_003358798.1__PHIEF11_0008__00008

Bact-Vir

NC_013696.1__YP_003358798.1__PHIEF11_0008__00008

Identity

Accession:
NC_013696 ↗
Kingdom:
phage

Quality

73.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Enterococcus_phage_phiEf11

TaxID: 663241

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 55-108
PDB
Domain cluster: representative
D2 medium residues 109-176
PDB
Domain cluster: rep: MK448810.1__QBX21425.1__Javan573_0038__00038__D95-153
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF14265.12 best DUF4355 32.5 1.20e-07 95.6% 42.7%
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ce7A00 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.79 54.0 4.95e-01 85.3% 54.4%
2oceA01 1.10.10.650 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › RuvA domain 2-like 0.77 53.0 4.37e-01 70.6% 73.5%
1l8qA02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.76 53.0 6.01e-01 75.0% 100.0%
2z4sA02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.72 54.0 5.37e-01 80.9% 76.4%
2fnaA02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.69 58.0 5.60e-01 95.6% 81.6%
2n50A00 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.68 46.0 4.37e-01 75.0% 59.5%
2bnkA00 1.10.8.600 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Phage phi29 replication organiser protein p16.7-like 0.68 56.0 5.76e-01 91.2% 95.3%
3deeA01 1.10.150.690 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DUF2063 0.68 52.0 4.82e-01 82.4% 77.9%
3nz4B03 1.10.274.20 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Phenylalanine ammonia-lyase 1; domain 3 0.67 55.0 4.76e-01 89.7% 67.3%
4neoA00 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.67 45.0 4.28e-01 76.5% 57.8%
2cgqA00 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.67 45.0 4.43e-01 75.0% 64.9%
2liuA01 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.66 47.0 4.45e-01 82.4% 61.2%
4ry2A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.66 48.0 3.86e-01 79.4% 92.2%
1gakA00 1.20.150.10 Mainly Alpha › Up-down Bundle › Lysin › Fertilization protein 0.66 53.0 4.27e-01 89.7% 74.5%
5tgtA02 1.10.10.350 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.64 45.0 3.68e-01 73.5% 85.4%
2kebA00 1.10.8.530 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › DNA polymerase alpha-primase, subunit B, N-terminal domain 0.63 47.0 4.51e-01 80.9% 79.5%
4cclA02 3.40.366.30 Alpha Beta › 3-Layer(aba) Sandwich › Malonyl-Coenzyme A Acyl Carrier Protein; domain 2 › 50S ribosomal protein L16 arginine hydroxylase; Chain A, Domain 2 0.61 40.0 3.02e-01 70.6% 27.4%
2afdA00 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.60 41.0 3.81e-01 77.9% 54.5%
2fdrA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.55 36.0 3.70e-01 70.6% 68.7%
4griA05 1.10.10.350 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.54 40.0 3.56e-01 79.4% 66.0%
4ip8A00 1.10.132.110 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Serum amyloid A protein 0.52 42.0 3.67e-01 89.7% 68.6%
6azyA01 1.10.1780.10 Mainly Alpha › Orthogonal Bundle › Double Clp-N motif › Clp, N-terminal domain 0.51 39.0 3.19e-01 82.4% 60.3%
2ee7A01 1.10.418.10 Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › Calponin-like domain 0.51 38.0 3.26e-01 80.9% 77.4%
ECOD (36)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4032135 632.2.1.39 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › DUF4355 0.96 83.0 7.75e-01 89.7% 76.2%
5063967 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.88 38.0 4.06e-01 89.7% 48.3%
3264568 3748.1.1.3 ↗ extended segments › 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain › 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain › 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain › eIF3h_C 0.83 46.0 3.89e-01 98.5% 37.1%
5083301 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.79 55.0 5.54e-01 73.5% 74.3%
3519328 148.1.3.18 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › TIP49_C 0.76 58.0 5.18e-01 82.4% 60.0%
4028941 148.1.3.173 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_RFC1 0.75 60.0 6.02e-01 95.6% 85.7%
3385989 101.1.6.0 ↗ alpha arrays › HTH › HTH › TrpR 0.74 57.0 5.66e-01 82.4% 80.0%
3603655 2004.1.1.66 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase_2 0.74 52.0 3.36e-01 75.0% 16.9%
4089409 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.74 58.0 5.50e-01 85.3% 73.8%
4449193 1134.1.2.0 ↗ alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Archaeal C-Ala helical domain 0.73 50.0 5.53e-01 70.6% 100.0%
4384656 632.2.1.4 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › GA-like 0.72 54.0 5.84e-01 79.4% 100.0%
4948156 2004.5.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › Differentially expressed in normal cells and neoplasia (DENN) domain › Differentially expressed in normal cells and neoplasia (DENN) domain 0.71 49.0 3.31e-01 72.1% 31.4%
3949742 132.1.1.1 ↗ alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) › PP-binding 0.71 57.0 5.00e-01 97.1% 59.0%
4385875 132.1.1.1 ↗ alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) › PP-binding 0.71 49.0 4.67e-01 76.5% 61.3%
5037154 4953.1.1.39 ↗ beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › LPG_synthase_TM 0.70 52.0 4.81e-01 77.9% 80.0%
3249624 132.1.1.0 ↗ alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) 0.69 48.0 4.48e-01 79.4% 58.8%
3511397 5067.1.1.3 ↗ alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Patched 0.67 56.0 3.83e-01 91.2% 74.0%
4956012 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.67 56.0 4.87e-01 92.6% 86.7%
5007277 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.67 49.0 4.51e-01 76.5% 89.4%
4934139 101.1.8.0 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.66 47.0 4.99e-01 75.0% 85.0%
3290586 132.1.1.1 ↗ alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) › PP-binding 0.66 45.0 4.31e-01 77.9% 61.3%
3120 163.1.1.1 ↗ alpha arrays › Fertilization protein › Fertilization protein › Fertilization protein › Egg_lysin 0.66 53.0 4.27e-01 89.7% 74.5%
4217720 132.1.1.1 ↗ alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) › PP-binding 0.65 52.0 4.74e-01 89.7% 65.6%
4660622 327.11.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) 0.64 49.0 3.22e-01 79.4% 35.1%
4669270 6026.1.1.42 ↗ alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain › CemA 0.64 46.0 4.31e-01 76.5% 65.9%
3438418 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.63 48.0 2.75e-01 92.6% 9.6%
3643488 192.15.1.11 ↗ alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › CemA 0.62 44.0 4.26e-01 73.5% 73.3%
5002748 605.1.1.1 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.62 45.0 4.34e-01 75.0% 70.7%
5052428 605.6.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › HP1531-like › HP1531-like 0.62 46.0 4.28e-01 88.2% 63.1%
3479030 103.11.1.0 ↗ alpha arrays › RuvA-C › RMI1 N-terminal helical domain-related › RMI1 N-terminal helical domain-related 0.61 47.0 4.69e-01 85.3% 95.7%
3287250 132.1.1.1 ↗ alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) › PP-binding 0.61 34.0 3.10e-01 72.1% 37.9%
3941872 132.1.1.1 ↗ alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) › PP-binding 0.60 40.0 3.91e-01 77.9% 62.7%
3959794 132.1.1.0 ↗ alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) 0.59 41.0 3.69e-01 80.9% 51.0%
4549888 132.1.1.1 ↗ alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) › PP-binding 0.57 37.0 3.42e-01 79.4% 48.4%
3231019 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.54 41.0 2.61e-01 83.8% 15.8%
3277917 132.1.1.1 ↗ alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) › PP-binding 0.53 43.0 3.56e-01 95.6% 65.9%