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NC_014636.1__YP_003969362.1__phiAS5_ORF0073__00073
Bact-VirNC_014636.1__YP_003969362.1__phiAS5_ORF0073__00073
Identity
- Accession:
- NC_014636 ↗
- Kingdom:
- phage
Quality
79.3
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Straboviridae›
Chrysonvirus›
Aeromonas_phage_phiAS5
TaxID: 879630
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 9-91
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2k5iA01 | 2.30.30.90 | Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) | 0.68 | 49.0 | 4.95e-01 | 100.0% | 76.2% |
| 3e1sA04 | 2.30.30.940 | Mainly Beta › Roll › SH3 type barrels. › | 0.61 | 38.0 | 4.11e-01 | 100.0% | 75.4% |
| 2bzyA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.60 | 31.0 | 3.50e-01 | 73.5% | 64.5% |
| 7afrX02 | 2.30.30.180 | Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain | 0.60 | 37.0 | 4.14e-01 | 100.0% | 85.0% |
| 1f0iA02 | 3.30.870.10 | Alpha Beta › 2-Layer Sandwich › Endonuclease; Chain A › Endonuclease Chain A | 0.58 | 43.0 | 3.04e-01 | 80.7% | 59.9% |
| 3pqhA01 | 2.20.220.20 | Mainly Beta › Single Sheet › Glycosyl hydrolase fold › | 0.57 | 25.0 | 2.83e-01 | 84.3% | 50.0% |
| 1yt3A01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.54 | 39.0 | 3.01e-01 | 77.1% | 46.9% |
| 3d79A01 | 3.10.450.120 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Pre-PUA domain; domain 1 | 0.53 | 37.0 | 3.83e-01 | 94.0% | 82.4% |
| 3d8dA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.52 | 40.0 | 3.44e-01 | 85.5% | 97.8% |
| 3uuwB02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.50 | 38.0 | 3.05e-01 | 84.3% | 94.0% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3245032 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.56 | 42.0 | 4.39e-01 | 100.0% | 89.3% |
| 3822212 | 376.1.2.16 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1-like_CT | 0.55 | 29.0 | 3.63e-01 | 80.7% | 93.2% |
| 3808167 | 376.1.2.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain | 0.54 | 28.0 | 3.37e-01 | 78.3% | 78.0% |
| 3271234 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.53 | 29.0 | 3.81e-01 | 92.8% | 100.0% |
| 4613433 | 2003.1.2.2 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › GMC_oxred_N | 0.53 | 42.0 | 2.82e-01 | 88.0% | 76.3% |
| 5057515 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.52 | 27.0 | 3.05e-01 | 78.3% | 65.0% |
| 3387043 | 378.1.1.1 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › Endonuclease_NS | 0.51 | 39.0 | 3.04e-01 | 84.3% | 71.2% |
| 5041026 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.51 | 40.0 | 4.07e-01 | 96.4% | 87.1% |
D2
high
residues 95-163
Domain cluster:
representative
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4gltA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.84 | 46.0 | 3.82e-01 | 72.5% | 33.3% |
| 4okvE00 | 6.10.140.1890 | Special › Helix non-globular › Helix Hairpins › | 0.80 | 48.0 | 5.02e-01 | 100.0% | 66.2% |
| 4kb2A01 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.78 | 54.0 | 4.52e-01 | 79.7% | 45.0% |
| 1wdzA00 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.78 | 53.0 | 3.63e-01 | 71.0% | 21.6% |
| 3d36B02 | 1.10.287.130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain | 0.77 | 40.0 | 4.32e-01 | 81.2% | 59.0% |
| 6ygiB01 | 1.10.4090.10 | Mainly Alpha › Orthogonal Bundle › Hepatitis B viral capsid (hbcag) fold › Viral capsid, core domain supefamily, Hepatitis B virus | 0.72 | 51.0 | 3.94e-01 | 76.8% | 34.9% |
| 1iq0A01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.66 | 47.0 | 2.96e-01 | 75.4% | 53.8% |
| 3ripA02 | 1.20.120.1900 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Gamma-tubulin complex, C-terminal domain | 0.63 | 53.0 | 3.44e-01 | 89.9% | 22.6% |
| 2b67A00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.62 | 44.0 | 3.14e-01 | 73.9% | 35.0% |
| 5i1uA00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.62 | 53.0 | 3.49e-01 | 97.1% | 90.0% |
| 4w4kA00 | 1.10.287.850 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain | 0.61 | 53.0 | 4.97e-01 | 100.0% | 76.8% |
| 2r4gA02 | 1.10.10.1970 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › TERT catalytic subunit-like | 0.60 | 41.0 | 4.28e-01 | 71.0% | 98.4% |
| 2ld7A00 | 6.10.160.20 | Special › Helix non-globular › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › | 0.60 | 43.0 | 3.97e-01 | 85.5% | 57.4% |
| 2z3xA00 | 6.10.10.80 | Special › Helix non-globular › Helicase, Ruva Protein; domain 3 › Small, acid-soluble spore protein, alpha/beta type-like | 0.58 | 43.0 | 4.75e-01 | 78.3% | 100.0% |
| 1e7lA02 | 1.10.720.10 | Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › | 0.58 | 40.0 | 4.44e-01 | 73.9% | 92.7% |
| 4fcgA00 | 3.80.10.10 | Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor | 0.57 | 48.0 | 3.28e-01 | 100.0% | 50.3% |
| 2q9rA01 | 1.20.1590.10 | Mainly Alpha › Up-down Bundle › YP_001051499.1 fold like › YP_001051499.1 domain like | 0.54 | 39.0 | 2.96e-01 | 79.7% | 77.4% |
| 1r6bX03 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.54 | 39.0 | 3.60e-01 | 75.4% | 64.8% |
| 2bg1A01 | 3.90.1310.40 | Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › | 0.54 | 38.0 | 3.74e-01 | 76.8% | 93.5% |
| 2n1fA00 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.54 | 37.0 | 3.49e-01 | 72.5% | 78.7% |
| 4am6A03 | 3.30.420.580 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.54 | 45.0 | 3.05e-01 | 92.8% | 58.9% |
| 3cl3A01 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.53 | 37.0 | 3.60e-01 | 76.8% | 64.3% |
| 3lcvB01 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.53 | 35.0 | 3.79e-01 | 73.9% | 82.5% |
| 3rpzA00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.52 | 42.0 | 2.81e-01 | 88.4% | 31.4% |
| 1vzsA01 | 1.10.246.110 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Mitochondrial ATP synthase-coupling factor 6 | 0.52 | 36.0 | 3.70e-01 | 81.2% | 79.4% |
ECOD (39)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3220017 | 174.1.1.13 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › DUF2700 | 0.84 | 58.0 | 4.41e-01 | 73.9% | 33.8% |
| 3489761 | 4177.1.1.2 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR | 0.84 | 58.0 | 3.90e-01 | 71.0% | 23.1% |
| 3294437 | 5086.1.1.110 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HisKA | 0.83 | 52.0 | 4.89e-01 | 92.8% | 55.0% |
| 3404270 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.82 | 57.0 | 4.52e-01 | 72.5% | 82.3% |
| 3313260 | 101.7.1.1 ↗ | alpha arrays › HTH › DEK-C › DEK-C › DEK_C | 0.81 | 54.0 | 5.39e-01 | 71.0% | 67.1% |
| 4417099 | 606.1.1.0 ↗ | alpha complex topology › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain | 0.81 | 55.0 | 4.73e-01 | 73.9% | 48.0% |
| 4006721 | 325.1.7.50 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › PF25876 | 0.79 | 54.0 | 5.05e-01 | 71.0% | 62.4% |
| 3973636 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.79 | 54.0 | 5.30e-01 | 71.0% | 70.7% |
| 3237824 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.79 | 62.0 | 4.70e-01 | 82.6% | 90.0% |
| 4284004 | 4106.1.1.1 ↗ | few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC | 0.79 | 53.0 | 3.76e-01 | 76.8% | 24.6% |
| 3386973 | 5086.1.1.84 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HH_MFP_RND | 0.79 | 54.0 | 4.92e-01 | 71.0% | 74.4% |
| 3178900 | 192.2.1.30 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Uds1 | 0.78 | 53.0 | 4.11e-01 | 71.0% | 36.6% |
| 3990854 | 192.7.1.0 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm | 0.77 | 53.0 | 4.79e-01 | 71.0% | 66.7% |
| 4433563 | 605.1.1.25 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › Zds_C | 0.75 | 46.0 | 4.78e-01 | 89.9% | 66.2% |
| 3805159 | 4099.1.1.11 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Med14 | 0.73 | 51.0 | 4.46e-01 | 72.5% | 50.0% |
| 3686642 | 3755.4.1.0 ↗ | alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain | 0.72 | 56.0 | 4.27e-01 | 82.6% | 67.1% |
| 3713900 | 6087.1.1.0 ↗ | extended segments › N-terminal region of NMB0537 › N-terminal region of NMB0537 › N-terminal region of NMB0537 | 0.69 | 52.0 | 4.66e-01 | 79.7% | 84.2% |
| 3228112 | 145.1.1.0 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain | 0.69 | 58.0 | 4.79e-01 | 92.8% | 92.0% |
| 4033697 | 632.1.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain | 0.69 | 53.0 | 4.64e-01 | 84.1% | 99.0% |
| 4010451 | 3788.1.1.15 ↗ | alpha bundles › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › PF27202 | 0.67 | 54.0 | 5.28e-01 | 85.5% | 96.0% |
| 5079472 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.67 | 51.0 | 3.41e-01 | 82.6% | 33.6% |
| 3782805 | 109.4.1.1136 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HAT_PRP39_N | 0.65 | 58.0 | 3.92e-01 | 100.0% | 38.8% |
| 4011005 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.65 | 45.0 | 4.62e-01 | 71.0% | 84.4% |
| 3971758 | 5086.1.1.84 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HH_MFP_RND | 0.65 | 52.0 | 4.84e-01 | 84.1% | 68.2% |
| 3268404 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.65 | 45.0 | 4.80e-01 | 73.9% | 93.3% |
| 3269634 | 192.17.1.0 ↗ | alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like | 0.64 | 52.0 | 5.50e-01 | 87.0% | 100.0% |
| 3616464 | 130.1.1.10 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP30_Sin3_bdg | 0.64 | 41.0 | 4.41e-01 | 72.5% | 79.3% |
| 3998355 | 190.1.1.25 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › PF29135 | 0.61 | 44.0 | 4.43e-01 | 76.8% | 75.7% |
| 4978026 | 2007.1.11.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › L-fucose isomerase, N-terminal and second domains | 0.61 | 49.0 | 3.95e-01 | 91.3% | 73.8% |
| 3368018 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.61 | 42.0 | 4.23e-01 | 73.9% | 72.9% |
| 3506288 | 4177.1.1.6 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR_3_WASP_bdg | 0.60 | 55.0 | 3.77e-01 | 98.6% | 85.0% |
| 4431938 | 507.1.1.7 ↗ | alpha arrays › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related › PF30523 | 0.59 | 50.0 | 3.59e-01 | 94.2% | 60.5% |
| 3198528 | 130.1.1.16 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Ish1 | 0.58 | 40.0 | 4.32e-01 | 72.5% | 92.7% |
| 4386708 | 130.1.1.49 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › PF27388 | 0.58 | 44.0 | 4.24e-01 | 85.5% | 73.8% |
| 3724166 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.58 | 40.0 | 4.10e-01 | 76.8% | 78.5% |
| 3660913 | 3826.1.1.0 ↗ | alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) | 0.57 | 40.0 | 3.68e-01 | 72.5% | 63.3% |
| 3651435 | 192.29.1.222 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › GATA_AreA | 0.56 | 53.0 | 5.12e-01 | 98.6% | 96.0% |
| 5061943 | 101.11.1.0 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 | 0.54 | 38.0 | 3.27e-01 | 76.8% | 54.4% |
| 195684 | 3813.1.1.1 ↗ | alpha bundles › DUF416 › DUF416 › DUF416 › DUF416 | 0.54 | 39.0 | 2.96e-01 | 79.7% | 77.4% |