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NC_014636.1__YP_003969383.1__phiAS5_ORF0094__00094

Bact-Vir

NC_014636.1__YP_003969383.1__phiAS5_ORF0094__00094

Identity

Accession:
NC_014636 ↗
Kingdom:
phage

Quality

87.4 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-83
PDB
CATH (50)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2pt7G02 3.30.1370.180 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.77 60.0 6.51e-01 87.5% 100.0%
1i94H01 3.30.1370.30 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.77 55.0 5.62e-01 82.5% 76.9%
3gkuA03 3.30.1370.50 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain 0.75 58.0 6.06e-01 88.7% 94.4%
3hz7A00 3.30.110.40 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › TusA-like domain 0.74 55.0 5.71e-01 83.7% 84.9%
1ug8A00 3.30.1370.50 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain 0.74 62.0 6.08e-01 93.8% 85.1%
5mmjh01 3.30.1370.30 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.73 52.0 5.41e-01 82.5% 80.0%
3evzA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.72 57.0 4.46e-01 87.5% 41.0%
2gukA00 3.30.2190.10 Alpha Beta › 2-Layer Sandwich › PG1857-like › PG1857-like 0.71 53.0 4.77e-01 85.0% 56.8%
2cpmA00 3.30.1370.50 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain 0.71 57.0 5.44e-01 98.8% 75.5%
2fphX01 3.30.1370.160 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.70 54.0 5.53e-01 86.3% 87.0%
1whrA00 3.30.1370.50 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain 0.69 53.0 4.62e-01 93.8% 54.0%
1i6uA01 3.30.1370.30 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.68 48.0 5.15e-01 82.5% 88.2%
2lxrA00 3.30.110.40 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › TusA-like domain 0.65 48.0 4.97e-01 83.7% 82.9%
3e05B00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.64 50.0 3.78e-01 83.7% 39.6%
2ln3A00 3.30.110.140 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › 0.64 47.0 4.69e-01 82.5% 75.9%
2vs7A02 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.63 46.0 4.69e-01 81.2% 78.2%
4dzrA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.63 49.0 3.93e-01 87.5% 41.7%
4kvxA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.62 49.0 4.04e-01 87.5% 47.4%
3mtiB00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.62 41.0 3.14e-01 73.8% 30.0%
3d3sA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.61 48.0 3.91e-01 87.5% 49.7%
4ponA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.60 45.0 3.57e-01 83.7% 37.8%
1gd8A00 3.90.1030.10 Alpha Beta › Alpha-Beta Complex › 50s Ribosomal Protein L17; Chain: A, › Ribosomal protein L17 0.59 46.0 4.25e-01 85.0% 98.1%
1ef0B02 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.59 49.0 3.72e-01 90.0% 42.0%
5w2fA01 3.30.780.10 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › SUI1-like domain 0.59 42.0 4.10e-01 77.5% 68.6%
3pqvC01 3.65.10.20 Alpha Beta › Alpha-beta prism › UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain › RNA 3'-terminal phosphate cyclase domain 0.59 47.0 3.35e-01 88.7% 51.8%
7qssA01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.59 49.0 3.80e-01 93.8% 49.5%
7n0eB02 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.57 42.0 3.70e-01 78.8% 64.8%
5yppA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.57 41.0 3.95e-01 76.2% 66.7%
5flmA02 3.30.1360.140 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.57 50.0 4.25e-01 100.0% 80.9%
1vkwA01 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.57 46.0 4.04e-01 88.7% 58.7%
2p8jA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.57 39.0 3.01e-01 73.8% 83.5%
3h7lA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 41.0 3.90e-01 77.5% 71.0%
5zhhA02 3.40.190.80 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › 0.55 39.0 3.44e-01 78.8% 50.0%
4n81A02 3.40.190.80 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › 0.55 39.0 3.48e-01 78.8% 51.3%
2ewhA01 3.30.70.1710 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › BMC (bacterial microcompartment) domain 0.55 40.0 3.93e-01 77.5% 74.1%
2ab5B01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.55 40.0 3.49e-01 78.8% 53.9%
6blkC00 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.55 42.0 3.37e-01 82.5% 82.9%
6wnsA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.54 44.0 3.43e-01 91.3% 62.5%
2bjiB02 3.40.190.80 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › 0.54 38.0 3.31e-01 78.8% 46.2%
6vh5C03 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.54 38.0 3.66e-01 77.5% 65.2%
7o4xA01 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 38.0 3.58e-01 76.2% 68.7%
1zvpD00 3.30.2130.10 Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like 0.53 43.0 3.79e-01 95.0% 87.0%
1u8sA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.53 37.0 3.61e-01 72.5% 73.3%
3ke2B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 41.0 3.85e-01 93.8% 69.8%
5dymA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 39.0 3.69e-01 80.0% 70.8%
1bm9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 43.0 3.72e-01 88.7% 65.0%
3mwbB03 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.52 37.0 3.54e-01 75.0% 65.3%
4b96A00 2.60.40.710 Mainly Beta › Sandwich › Immunoglobulin-like › Endoglucanase-like 0.51 40.0 3.38e-01 88.7% 49.7%
1o51A00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.50 34.0 3.39e-01 76.2% 64.0%
6n2nA01 3.40.920.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 0.50 38.0 2.98e-01 81.2% 46.6%
ECOD (70)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3410614 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.79 65.0 5.87e-01 96.2% 66.7%
3595328 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.77 58.0 5.25e-01 90.0% 60.0%
3879109 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.77 58.0 5.36e-01 90.0% 62.5%
3740807 320.1.1.1 a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.76 58.0 5.67e-01 87.5% 75.3%
3357930 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.76 59.0 6.12e-01 90.0% 89.3%
4981701 328.5.1.1 a+b two layers › IF3-like › SirA-like › SirA-like › TusA 0.75 54.0 5.88e-01 83.7% 92.3%
4228350 320.1.1.1 a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.75 55.0 6.02e-01 83.7% 96.9%
3657448 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.74 64.0 5.31e-01 96.2% 54.3%
4937497 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.74 56.0 5.63e-01 87.5% 78.8%
3926462 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.74 56.0 5.11e-01 90.0% 61.9%
3698196 320.1.1.1 a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.73 53.0 5.09e-01 78.8% 67.8%
4988151 328.5.1.1 a+b two layers › IF3-like › SirA-like › SirA-like › TusA 0.73 57.0 5.87e-01 83.7% 89.3%
3262749 320.1.1.1 a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.72 60.0 5.46e-01 90.0% 68.6%
3811780 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.72 57.0 5.10e-01 90.0% 60.0%
3385565 320.1.1.16 a+b two layers › R3H domain-like › R3H domain › R3H domain › HP0268 0.72 54.0 5.50e-01 78.8% 82.1%
4602133 320.2.1.1 a+b two layers › R3H domain-like › Ribosomal protein S8, N-terminal domain › Ribosomal protein S8, N-terminal domain › Ribosomal_S8 0.71 53.0 5.43e-01 82.5% 82.7%
3597859 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.71 58.0 5.11e-01 91.3% 60.0%
3578925 320.1.1.1 a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.71 58.0 5.27e-01 90.0% 66.7%
3581967 320.1.1.1 a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.71 52.0 5.65e-01 83.7% 95.4%
4949235 2003.1.5.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.71 54.0 4.13e-01 87.5% 35.1%
3987280 320.1.1.3 a+b two layers › R3H domain-like › R3H domain › R3H domain › YlmH_1st 0.71 55.0 5.43e-01 86.3% 78.8%
3427796 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.71 55.0 5.32e-01 86.3% 74.4%
3250910 320.1.1.1 a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.71 54.0 5.68e-01 88.7% 92.9%
3170274 320.1.1.1 a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.71 50.0 4.88e-01 82.5% 66.7%
3512868 246.3.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos 0.70 52.0 3.26e-01 87.5% 15.5%
3780948 320.1.1.1 a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.70 60.0 5.63e-01 100.0% 78.0%
3416416 320.1.1.1 a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.70 57.0 5.20e-01 90.0% 67.6%
3175131 246.3.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos 0.70 51.0 3.28e-01 88.7% 16.4%
3737985 320.1.1.1 a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.70 53.0 4.99e-01 90.0% 66.0%
5015712 2003.1.5.54 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_10 0.69 60.0 4.11e-01 93.8% 34.8%
3473363 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.69 53.0 5.72e-01 83.7% 100.0%
3517969 320.1.1.1 a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.69 56.0 5.36e-01 90.0% 84.2%
3824796 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.69 53.0 5.61e-01 91.3% 97.1%
4059207 2003.1.5.25 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GidB 0.69 51.0 3.75e-01 80.0% 30.3%
3226102 320.1.1.1 a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.68 56.0 5.11e-01 91.3% 66.7%
3218484 320.1.1.1 a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.68 53.0 5.51e-01 93.8% 97.1%
3308590 320.1.1.1 a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.67 57.0 5.36e-01 100.0% 76.0%
4947647 2003.1.5.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.67 54.0 4.16e-01 90.0% 38.9%
5022350 2003.1.5.15 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › FtsJ 0.67 53.0 4.03e-01 83.7% 37.6%
4973038 2003.1.5.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.67 52.0 3.93e-01 87.5% 33.7%
None 0.67 56.0 3.94e-01 92.5% 35.7%
4025140 246.3.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos 0.66 56.0 3.67e-01 92.5% 38.5%
3507800 246.3.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos 0.66 56.0 3.64e-01 92.5% 44.0%
3663972 246.3.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos 0.66 56.0 3.99e-01 92.5% 48.8%
4029776 246.3.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos 0.66 49.0 3.18e-01 87.5% 17.5%
3708567 2003.1.5.66 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 0.64 51.0 3.41e-01 88.7% 22.7%
3358067 246.3.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos 0.63 53.0 3.54e-01 92.5% 31.0%
4992480 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.62 46.0 4.48e-01 83.7% 70.0%
3602264 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.62 46.0 4.56e-01 83.7% 74.1%
3642333 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.62 55.0 4.30e-01 100.0% 60.0%
3602910 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.61 46.0 4.44e-01 80.0% 73.3%
4934172 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.61 45.0 4.81e-01 80.0% 92.9%
4963469 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.60 49.0 4.46e-01 87.5% 78.1%
3174952 69.1.1.12 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hom_end 0.60 42.0 3.82e-01 78.8% 53.6%
4026240 328.6.1.2 a+b two layers › IF3-like › EPT/RTPC-like › EPT/RTPC-like › RTC 0.58 49.0 3.47e-01 95.0% 54.9%
4664239 304.130.1.1 a+b two layers › Alpha-beta plaits › Uncharacterized protein MK0293 N-terminal domain › Uncharacterized protein MK0293 N-terminal domain › Ni_insertion 0.58 39.0 3.78e-01 76.2% 61.1%
3602142 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.58 46.0 4.24e-01 85.0% 77.1%
4997276 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.58 48.0 3.75e-01 90.0% 51.7%
5010338 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.58 40.0 3.60e-01 76.2% 50.4%
4999898 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.58 45.0 4.40e-01 85.0% 77.8%
5074450 305.1.1.1 a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L 0.58 40.0 3.81e-01 82.5% 59.2%
4007701 1075.1.2.1 alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › FtsX 0.58 48.0 2.95e-01 90.0% 86.6%
5057183 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.57 47.0 4.44e-01 90.0% 87.4%
5065934 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.56 41.0 4.06e-01 78.8% 76.5%
4977961 225.1.1.0 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 0.56 43.0 3.48e-01 83.7% 87.7%
3412476 7587.1.1.1 a/b three-layered sandwiches › Rossmann-like domain in carbohydrate phosphatases › Rossmann-like domain in carbohydrate phosphatases › Rossmann-like domain in carbohydrate phosphatases › Inositol_P 0.54 38.0 3.31e-01 78.8% 47.2%
3969982 225.1.1.0 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 0.54 42.0 3.39e-01 83.7% 82.5%
5067233 7587.1.1.1 a/b three-layered sandwiches › Rossmann-like domain in carbohydrate phosphatases › Rossmann-like domain in carbohydrate phosphatases › Rossmann-like domain in carbohydrate phosphatases › Inositol_P 0.54 38.0 3.38e-01 78.8% 51.3%
3500427 3914.1.1.2 alpha bundles › TMEM16 lipid scramblase transmembrane domain › TMEM16 lipid scramblase transmembrane domain › TMEM16 lipid scramblase transmembrane domain › Anoctamin,Anoct_dimer 0.51 45.0 2.59e-01 97.5% 48.5%
1487486 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.51 35.0 3.34e-01 72.5% 58.2%