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NC_014636.1__YP_003969472.1__phiAS5_ORF0183__00183

Bact-Vir

NC_014636.1__YP_003969472.1__phiAS5_ORF0183__00183

Identity

Accession:
NC_014636 ↗
Kingdom:
phage

Quality

80.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Chrysonvirus› Aeromonas_phage_phiAS5

TaxID: 879630

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-70
PDB
Domain cluster: representative
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.78 49.0 5.68e-01 100.0% 91.7%
2ldmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.76 49.0 5.43e-01 100.0% 84.9%
1zuyA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.74 57.0 6.11e-01 100.0% 98.3%
4dq2A03 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.73 45.0 5.24e-01 100.0% 91.5%
2gtjA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 52.0 5.12e-01 100.0% 75.7%
2eyzA03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 46.0 4.21e-01 88.4% 52.7%
3j7yD02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.68 50.0 4.75e-01 100.0% 66.7%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 48.0 5.06e-01 100.0% 83.9%
2eayB02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.67 42.0 4.77e-01 100.0% 89.8%
4krtB03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 57.0 5.83e-01 100.0% 98.5%
3mp6A05 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 44.0 4.64e-01 100.0% 77.8%
1vwxA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.64 48.0 4.64e-01 100.0% 70.0%
2ra2B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.60 41.0 4.40e-01 100.0% 86.2%
1x6oA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 40.0 3.92e-01 78.3% 91.1%
2b3yA05 3.20.19.10 Alpha Beta › Alpha-Beta Barrel › Aconitase; domain 4 › Aconitase, domain 4 0.56 44.0 3.17e-01 91.3% 86.0%
1vq8A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 40.0 3.90e-01 76.8% 69.2%
3q9tA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 47.0 3.23e-01 97.1% 58.0%
5c3vA01 3.30.800.10 Alpha Beta › 2-Layer Sandwich › Phosphatidylinositol Phosphate Kinase II Beta › Phosphatidylinositol Phosphate Kinase II Beta 0.55 45.0 3.50e-01 94.2% 89.8%
1b37A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 46.0 3.23e-01 95.7% 68.9%
4r78A02 3.90.1200.10 Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe 0.55 38.0 2.79e-01 72.5% 82.2%
4hcsA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 39.0 4.02e-01 76.8% 85.1%
1khiA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 39.0 3.88e-01 78.3% 93.1%
1hyuA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 45.0 3.39e-01 95.7% 62.6%
5ygqA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 45.0 3.24e-01 97.1% 58.0%
5v6fA00 2.100.10.30 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Jacalin-like lectin domain 0.53 44.0 3.61e-01 97.1% 97.1%
1t6lA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.53 42.0 2.92e-01 91.3% 48.6%
3ab1B01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 43.0 3.13e-01 95.7% 59.4%
3b6hA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.52 38.0 2.38e-01 81.2% 86.4%
3oyyA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 37.0 3.78e-01 78.3% 93.8%
3oajA02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.52 39.0 3.09e-01 81.2% 89.6%
8c0zE01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 43.0 3.60e-01 97.1% 94.7%
4fk1A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 42.0 3.19e-01 97.1% 62.0%
2ei0A02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.51 36.0 2.81e-01 73.9% 48.0%
6b4oA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 43.0 3.65e-01 97.1% 96.6%
1rsgA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 43.0 3.00e-01 98.6% 58.0%
3f8dB01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.50 42.0 3.17e-01 97.1% 60.5%
3jyyA01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.50 39.0 3.19e-01 85.5% 58.2%
5yrzB00 3.30.920.30 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. 0.50 31.0 3.33e-01 85.5% 74.1%
6az1E02 2.40.50.740 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Ribosomal protein S4, central domain 0.50 34.0 3.78e-01 76.8% 98.0%
ECOD (57)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3702915 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.80 60.0 6.43e-01 100.0% 91.7%
3222147 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.79 56.0 5.94e-01 100.0% 85.0%
3415045 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.79 60.0 5.98e-01 100.0% 78.6%
3623890 4.1.1.322 ↗ beta barrels › SH3 › SH3 › SH3 › GPKOW_C 0.79 56.0 5.18e-01 100.0% 60.0%
3487936 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 59.0 5.90e-01 100.0% 78.6%
3555931 4.1.1.322 ↗ beta barrels › SH3 › SH3 › SH3 › GPKOW_C 0.77 55.0 4.57e-01 100.0% 44.3%
4953223 4.1.1.28 ↗ beta barrels › SH3 › SH3 › SH3 › BPL_C 0.77 49.0 5.64e-01 100.0% 90.0%
4002679 4.1.1.322 ↗ beta barrels › SH3 › SH3 › SH3 › GPKOW_C 0.77 63.0 5.17e-01 100.0% 50.8%
1263713 4.1.1.102 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_3 0.77 49.0 5.49e-01 100.0% 86.5%
3496355 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 56.0 6.21e-01 98.6% 98.2%
5038405 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 43.0 5.18e-01 100.0% 86.7%
3924338 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.75 57.0 5.67e-01 100.0% 78.6%
3873942 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 58.0 5.94e-01 100.0% 87.7%
4995669 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.74 66.0 6.42e-01 100.0% 93.3%
4038705 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.71 60.0 6.19e-01 100.0% 95.4%
3660358 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 49.0 5.19e-01 100.0% 81.7%
2561577 4.1.1.28 ↗ beta barrels › SH3 › SH3 › SH3 › BPL_C 0.71 45.0 4.74e-01 100.0% 72.1%
3895018 4.1.1.118 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_15 0.71 59.0 6.12e-01 100.0% 98.5%
2525277 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.69 45.0 4.81e-01 100.0% 78.0%
3756676 4.1.1.118 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_15 0.68 57.0 5.03e-01 100.0% 63.0%
3501574 4.1.1.118 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_15 0.68 59.0 5.78e-01 100.0% 89.3%
3593607 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 48.0 5.20e-01 100.0% 92.7%
3323984 4.1.1.38 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C 0.68 50.0 3.68e-01 100.0% 29.7%
3556321 4.1.1.118 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_15 0.67 57.0 5.48e-01 100.0% 82.5%
5022448 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 54.0 5.30e-01 100.0% 85.3%
3899840 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.63 44.0 3.93e-01 72.5% 58.9%
2723695 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 34.0 4.10e-01 82.6% 82.2%
3441677 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 39.0 4.41e-01 97.1% 96.0%
3364309 220.1.1.76 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.58 47.0 3.93e-01 92.8% 83.1%
5065184 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 35.0 4.06e-01 89.9% 95.6%
4041551 220.1.1.76 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.56 44.0 3.80e-01 91.3% 96.7%
3592332 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 49.0 4.23e-01 100.0% 63.8%
2755042 1129.1.1.1 ↗ a+b three layers › Mitochondrial complex I, B17.2 subunit › Mitochondrial complex I, B17.2 subunit › Mitochondrial complex I, B17.2 subunit › NDUFA12 0.54 38.0 3.01e-01 91.3% 35.2%
4144845 220.1.1.289 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › HdcB 0.54 44.0 3.85e-01 92.8% 71.8%
3513810 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 43.0 3.60e-01 94.2% 59.3%
2156991 2003.1.2.18 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.54 45.0 2.90e-01 95.7% 81.1%
4141911 2003.1.2.18 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.53 45.0 2.73e-01 97.1% 52.0%
3955201 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.53 45.0 3.42e-01 97.1% 56.6%
3187470 2003.1.2.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.53 44.0 3.01e-01 95.7% 51.7%
4079351 2003.1.2.25 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.53 44.0 3.17e-01 95.7% 53.8%
4389738 2003.1.2.11 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.52 44.0 3.22e-01 95.7% 58.3%
3662052 2.1.1.9 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S4e 0.52 36.0 3.45e-01 78.3% 60.0%
1391704 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.52 43.0 3.57e-01 92.8% 81.0%
3277752 2003.1.3.23 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › NAD_binding_9 0.52 42.0 2.51e-01 94.2% 85.5%
3659103 2.1.1.9 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S4e 0.52 35.0 3.92e-01 76.8% 100.0%
3944169 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.51 43.0 3.34e-01 97.1% 68.5%
1824581 316.1.1.1 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › PolyA_pol 0.51 40.0 3.11e-01 87.0% 47.8%
4933970 2.1.1.9 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S4e 0.51 37.0 3.88e-01 78.3% 91.7%
1833392 2003.1.2.16 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3,NAD_binding_8 0.51 42.0 3.32e-01 95.7% 94.4%
4302485 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.51 43.0 3.40e-01 97.1% 94.7%
3722079 2003.1.2.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.51 42.0 2.68e-01 95.7% 42.3%
5023580 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.50 40.0 4.11e-01 92.8% 93.8%
2846268 2003.1.2.13 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.50 41.0 3.12e-01 95.7% 88.9%
4288670 2003.1.2.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.50 42.0 2.74e-01 95.7% 50.0%
4322502 2003.1.2.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.50 41.0 2.56e-01 94.2% 65.2%
4949453 2.1.1.9 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S4e 0.50 36.0 3.76e-01 78.3% 84.6%
3184377 2003.1.2.18 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.50 42.0 2.62e-01 97.1% 55.4%