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NC_014636.1__YP_003969556.1__phiAS5_ORF0267__00267

Bact-Vir

NC_014636.1__YP_003969556.1__phiAS5_ORF0267__00267

Identity

Accession:
NC_014636 ↗
Kingdom:
phage

Quality

75.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Chrysonvirus› Aeromonas_phage_phiAS5

TaxID: 879630

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-9_113-202
PDB
D2 high residues 15-109
PDB
Domain cluster: rep: MT161459.1__QIW86869.1__AHP1_381__00038__D12-116
CATH (42)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1nkgA01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.69 51.0 3.72e-01 76.8% 87.6%
3bvxA04 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.68 50.0 3.56e-01 77.9% 79.6%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.67 45.0 5.22e-01 96.8% 100.0%
7zgmA01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.66 50.0 3.67e-01 80.0% 77.5%
5upiA01 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.66 47.0 3.72e-01 73.7% 89.9%
3w7tA01 2.70.98.50 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › putative glycoside hydrolase family protein from bacillus halodurans 0.65 50.0 3.74e-01 81.1% 92.7%
6fopA01 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.65 47.0 3.58e-01 75.8% 73.9%
1yqfB00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.65 53.0 4.28e-01 87.4% 76.3%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.64 45.0 4.99e-01 94.7% 92.0%
4fr9A00 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.64 46.0 4.02e-01 74.7% 62.4%
4on1A01 2.40.128.470 Mainly Beta › Beta Barrel › Lipocalin › 0.64 47.0 4.12e-01 76.8% 56.1%
5ee2A00 2.40.160.90 Mainly Beta › Beta Barrel › Porin › 0.64 53.0 4.91e-01 91.6% 96.7%
1mdcA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.63 46.0 4.16e-01 76.8% 69.5%
4eqaC00 2.40.128.650 Mainly Beta › Beta Barrel › Lipocalin › 0.63 45.0 3.90e-01 74.7% 92.0%
3vgzC00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.63 45.0 3.07e-01 73.7% 46.1%
3p24A01 2.40.128.470 Mainly Beta › Beta Barrel › Lipocalin › 0.62 47.0 4.05e-01 81.1% 83.7%
2rcqA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.62 49.0 4.33e-01 85.3% 93.6%
5gv0A00 2.40.160.110 Mainly Beta › Beta Barrel › Porin › 0.62 52.0 4.39e-01 93.7% 83.3%
7dpyB01 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.61 45.0 4.77e-01 78.9% 100.0%
2vt8A00 3.40.1000.30 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › 0.59 51.0 4.47e-01 94.7% 77.6%
1o8vA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.59 46.0 4.10e-01 83.2% 68.4%
4d6gA03 2.60.220.10 Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal 0.58 44.0 3.93e-01 78.9% 100.0%
3w9kA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.58 46.0 4.17e-01 87.4% 82.2%
1ealA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.58 46.0 4.14e-01 84.2% 68.5%
2mqdA00 3.30.1460.60 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.58 50.0 4.63e-01 94.7% 89.9%
4csdB00 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.57 48.0 3.53e-01 94.7% 92.9%
4akmB00 2.40.160.110 Mainly Beta › Beta Barrel › Porin › 0.57 47.0 4.06e-01 93.7% 84.1%
1pbyA02 2.40.128.120 Mainly Beta › Beta Barrel › Lipocalin › Quinohemoprotein amine dehydrogenase alpha subunit, domain 2 0.57 48.0 4.66e-01 93.7% 97.2%
2qm4A01 2.170.210.10 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › DNA double-strand break repair and VJ recombination XRCC4, N-terminal 0.56 40.0 3.53e-01 74.7% 96.5%
1dbzA01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.56 47.0 3.81e-01 92.6% 78.3%
4q1vA01 2.140.10.30 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain 0.55 41.0 2.65e-01 78.9% 33.5%
2jkbA02 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.54 46.0 3.21e-01 98.9% 97.3%
3hfqA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 46.0 3.23e-01 98.9% 99.1%
3kl0D01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.53 44.0 4.27e-01 91.6% 84.9%
1gofA02 2.130.10.80 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Galactose oxidase/kelch, beta-propeller 0.52 43.0 2.96e-01 93.7% 71.9%
1ospO02 3.90.930.1 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.52 44.0 3.86e-01 95.8% 84.2%
1vr8A00 3.40.1000.20 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › TM1622-like 0.51 39.0 3.52e-01 82.1% 91.1%
2wjsA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 44.0 3.63e-01 98.9% 92.3%
2r1bA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.50 44.0 3.54e-01 100.0% 88.4%
1okqA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.50 43.0 3.61e-01 97.9% 93.7%
5z5dA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.50 40.0 3.24e-01 88.4% 82.9%
1pz7A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.50 43.0 3.55e-01 98.9% 91.5%
ECOD (62)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4963006 4.1.1.490 ↗ beta barrels › SH3 › SH3 › SH3 › PF26269 0.70 56.0 5.94e-01 92.6% 96.5%
3967111 3338.2.1.2 ↗ a+b two layers › Fragilysin-3 prodomain-like › Type II secretion chaperone CpaB › Type II secretion chaperone CpaB › BamI_lipocalin 0.70 53.0 4.84e-01 80.0% 64.8%
5014686 809.2.1.0 ↗ a+b two layers › BLIP-like › BT0923-like › BT0923-like 0.69 36.0 4.61e-01 77.9% 87.3%
5020511 3338.2.1.0 ↗ a+b two layers › Fragilysin-3 prodomain-like › Type II secretion chaperone CpaB › Type II secretion chaperone CpaB 0.67 51.0 4.75e-01 78.9% 73.9%
4945471 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.65 37.0 4.41e-01 72.6% 83.1%
3224579 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.65 51.0 3.49e-01 82.1% 27.7%
5011042 3692.1.1.0 ↗ a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain 0.65 46.0 4.18e-01 74.7% 62.3%
3977969 9.11.1.0 ↗ beta barrels › Lipocalins/Streptavidin › YdhA-like › YdhA-like 0.65 54.0 5.15e-01 89.5% 95.5%
591 4.1.1.139 ↗ beta barrels › SH3 › SH3 › SH3 › IF5A-like_N 0.64 45.0 4.99e-01 95.8% 92.1%
3733356 298.1.1.25 ↗ a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › ox_reductase_C 0.64 50.0 4.18e-01 84.2% 87.3%
3720660 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 45.0 4.99e-01 94.7% 93.3%
3276429 5.1.4.8 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.63 43.0 3.03e-01 71.6% 40.0%
3859372 9.13.1.0 ↗ beta barrels › Lipocalins/Streptavidin › AOC barrel-like › AOC barrel-like 0.63 47.0 4.61e-01 80.0% 79.0%
5013018 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.63 46.0 4.14e-01 76.8% 60.0%
2717534 12.3.1.31 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › YgjK_N 0.62 49.0 3.50e-01 85.3% 76.8%
5043414 4252.1.1.0 ↗ beta barrels › AttH-like › AttH-like › AttH-like 0.62 51.0 4.57e-01 90.5% 98.5%
3697524 9.2.1.7 ↗ beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › PF30970 0.62 46.0 4.79e-01 80.0% 86.7%
3701925 292.2.1.0 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.62 48.0 4.45e-01 83.2% 75.8%
3212817 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.61 46.0 3.97e-01 80.0% 78.0%
3438374 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.61 51.0 3.43e-01 90.5% 63.1%
2552758 9.1.1.24 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_7 0.61 45.0 4.00e-01 77.9% 63.5%
3289794 223.3.1.1 ↗ a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase 0.61 40.0 3.81e-01 71.6% 57.3%
3215166 3180.1.1.0 ↗ a+b two layers › LEE-encoded effector EspG N-terminal domain-related › LEE-encoded effector EspG N-terminal domain-related › LEE-encoded effector EspG N-terminal domain-related 0.61 44.0 4.49e-01 76.8% 83.2%
3194130 5.1.5.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.61 44.0 2.90e-01 75.8% 32.4%
4436049 1190.1.1.1 ↗ a+b two layers › Curli production assembly/transport component CsgF › Curli production assembly/transport component CsgF › Curli production assembly/transport component CsgF › CsgF 0.61 38.0 3.82e-01 75.8% 61.0%
3238997 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.60 45.0 3.98e-01 77.9% 70.7%
3894563 9.1.1.24 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_7 0.60 45.0 4.04e-01 77.9% 67.2%
3737835 241.15.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain 0.60 51.0 5.05e-01 91.6% 88.0%
4419937 77.1.1.0 ↗ beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein 0.59 40.0 4.25e-01 70.5% 80.0%
3556710 9.1.1.24 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_7 0.59 47.0 4.22e-01 84.2% 68.8%
5014493 331.3.1.12 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › STK_08120-like 0.59 51.0 3.89e-01 95.8% 91.7%
3463667 5.1.3.144 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › b-prop_At3g26010-like 0.59 49.0 3.35e-01 90.5% 83.6%
3567966 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.58 43.0 4.38e-01 77.9% 94.7%
2800366 5.1.4.14 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Peptidase_S9_N 0.58 51.0 3.50e-01 97.9% 91.2%
3474457 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.58 42.0 4.24e-01 75.8% 86.3%
3984091 3180.1.1.1 ↗ a+b two layers › LEE-encoded effector EspG N-terminal domain-related › LEE-encoded effector EspG N-terminal domain-related › LEE-encoded effector EspG N-terminal domain-related › EspG 0.58 44.0 4.28e-01 81.1% 85.7%
4946341 5.1.10.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed 0.57 40.0 2.99e-01 73.7% 62.0%
3204975 241.15.1.2 ↗ a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › PI31_Prot_N 0.56 49.0 4.13e-01 97.9% 78.2%
4012990 241.15.1.2 ↗ a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › PI31_Prot_N 0.56 50.0 4.09e-01 100.0% 74.9%
3394516 241.15.1.2 ↗ a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › PI31_Prot_N 0.56 48.0 4.21e-01 94.7% 76.4%
3604518 3111.1.1.0 ↗ beta barrels › STT3/PglB/AglB beta-barrel domain › STT3/PglB/AglB beta-barrel domain › STT3/PglB/AglB beta-barrel domain 0.56 43.0 4.29e-01 82.1% 80.0%
1400361 5.1.3.34 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF5128 0.56 49.0 3.32e-01 96.8% 88.4%
5015520 71.1.1.0 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.56 48.0 3.68e-01 93.7% 59.0%
3415592 241.15.1.2 ↗ a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › PI31_Prot_N 0.55 48.0 4.16e-01 96.8% 78.7%
3233005 207.1.1.81 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.55 41.0 3.01e-01 77.9% 54.9%
3484246 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.55 47.0 3.14e-01 93.7% 81.1%
5051538 298.1.1.8 ↗ a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C 0.55 46.0 3.32e-01 90.5% 90.9%
3811973 5.1.3.6 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 0.55 45.0 3.27e-01 93.7% 80.7%
3821429 241.15.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain 0.55 47.0 3.98e-01 94.7% 66.9%
3196366 298.1.1.24 ↗ a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 0.54 47.0 3.80e-01 96.8% 91.9%
5039218 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.54 43.0 3.85e-01 85.3% 77.7%
3417117 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.53 47.0 3.27e-01 100.0% 89.7%
3564215 71.1.1.14 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › GPCR_chapero_1 0.53 47.0 3.57e-01 97.9% 79.4%
3630390 5.1.4.271 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, PF30361 0.53 43.0 3.01e-01 92.6% 87.5%
3818723 5.1.8.12 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › putative conserved lipoprotein NT01CX_1156 › FBA_3 0.52 40.0 3.30e-01 82.1% 86.3%
4956163 71.1.1.0 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.52 44.0 3.67e-01 95.8% 78.9%
3678427 5.1.4.379 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, WD40_2 0.52 46.0 3.27e-01 100.0% 98.1%
3405655 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.52 45.0 3.44e-01 100.0% 80.8%
None — 0.52 44.0 2.70e-01 97.9% 35.1%
4027822 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.51 40.0 3.11e-01 85.3% 90.5%
3242741 207.1.1.81 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.50 37.0 2.72e-01 76.8% 36.5%
3218903 207.1.1.81 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.50 40.0 3.14e-01 87.4% 47.1%