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NC_014636.1__YP_003969577.1__phiAS5_ORF0288__00288

Bact-Vir

NC_014636.1__YP_003969577.1__phiAS5_ORF0288__00288

Identity

Accession:
NC_014636 ↗
Kingdom:
phage

Quality

74.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Chrysonvirus› Aeromonas_phage_phiAS5

TaxID: 879630

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-82
PDB
Domain cluster: rep: ALT_09252017_20_scaffold_47_prodigal-single.1__X__X__00308__D5-60
CATH (34)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4r80A00 3.10.450.630 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.69 50.0 5.12e-01 84.8% 80.3%
4exrA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.68 45.0 4.72e-01 84.8% 76.1%
4exrA01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.67 46.0 4.58e-01 81.0% 69.1%
1imuA00 3.30.160.100 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like 0.66 46.0 4.23e-01 74.7% 57.0%
2rqlA00 3.30.160.100 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like 0.63 46.0 4.40e-01 81.0% 65.3%
5fgoA00 3.10.450.700 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 45.0 4.88e-01 98.7% 98.4%
3ulbA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 40.0 3.98e-01 72.2% 77.1%
3rmuA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.58 42.0 3.56e-01 81.0% 45.5%
3g1jA00 2.30.30.350 Mainly Beta › Roll › SH3 type barrels. › mobile metagenome of vibrio cholerae. Integron cassette protein vch_cass4. 0.57 46.0 4.45e-01 87.3% 83.3%
2ltsA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.56 36.0 3.53e-01 72.2% 59.3%
1txdA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 39.0 3.40e-01 73.4% 70.2%
1lf7A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 48.0 3.89e-01 100.0% 77.4%
4azpA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 43.0 3.68e-01 87.3% 98.5%
3fehA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 41.0 3.62e-01 82.3% 97.6%
5x6vF00 3.30.450.190 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.54 38.0 3.37e-01 73.4% 97.5%
3rc2A02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.54 44.0 3.41e-01 91.1% 86.8%
3o6qA02 3.30.70.2720 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 42.0 3.73e-01 83.5% 90.4%
6fgcA01 3.40.980.10 Alpha Beta › 3-Layer(aba) Sandwich › Molybdenum Cofactor Biosythetic Enzyme; Chain A › MoaB/Mog-like domain 0.54 38.0 2.95e-01 73.4% 85.6%
3uuwB02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.54 46.0 3.61e-01 100.0% 59.8%
4gnxB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 44.0 3.87e-01 92.4% 95.1%
4pifA00 2.100.10.30 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Jacalin-like lectin domain 0.53 38.0 3.24e-01 77.2% 71.2%
1wguA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 40.0 3.51e-01 79.7% 59.1%
1wiiA01 2.20.25.190 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.53 33.0 3.60e-01 78.5% 79.0%
6j8yC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.53 46.0 3.27e-01 100.0% 73.3%
4bfiB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 38.0 3.64e-01 75.9% 87.8%
2eqmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.52 33.0 3.78e-01 83.5% 94.3%
2ra6C00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 43.0 3.70e-01 98.7% 90.9%
2l33A00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.51 34.0 3.30e-01 72.2% 60.4%
4ktwA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.51 36.0 2.90e-01 73.4% 60.0%
5m8cB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 43.0 2.92e-01 98.7% 44.8%
5bncA02 3.20.180.10 Alpha Beta › Alpha-Beta Barrel › Split barrel-like › PNP-oxidase-like 0.51 40.0 3.93e-01 93.7% 83.9%
4joiA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.50 41.0 3.48e-01 92.4% 93.6%
3p8bB02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.50 34.0 3.73e-01 89.9% 90.3%
1di2A00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.50 33.0 3.52e-01 72.2% 78.3%
ECOD (57)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4027687 330.3.1.0 ↗ a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like 0.73 36.0 4.32e-01 78.5% 69.1%
4028791 252.2.1.1 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › AP2 0.73 36.0 4.21e-01 74.7% 67.3%
4029445 252.2.1.1 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › AP2 0.71 37.0 4.45e-01 83.5% 74.5%
3980114 3860.1.1.158 ↗ alpha bundles › Myosin VI lever arm › Myosin VI lever arm › Myosin VI lever arm › ThrE 0.69 54.0 4.46e-01 100.0% 46.0%
4644747 330.16.1.0 ↗ a+b two layers › dsRBD-like › ODA16 N-terminal domain › ODA16 N-terminal domain 0.67 46.0 4.61e-01 70.9% 73.8%
5012515 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.66 48.0 4.39e-01 86.1% 58.1%
3926989 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.64 51.0 3.30e-01 84.8% 20.9%
4027686 252.2.1.0 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.63 35.0 4.10e-01 83.5% 78.2%
3252808 1170.1.2.0 ↗ beta barrels › IL8-related › IL8-related › chemokine-related domain in glycoprotein L (gL) 0.63 42.0 4.44e-01 81.0% 77.1%
4225322 4263.2.1.1 ↗ a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain › FtsH_ext 0.63 37.0 3.96e-01 75.9% 69.2%
4025434 252.2.1.1 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › AP2 0.61 37.0 3.82e-01 89.9% 62.7%
5011151 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.61 38.0 3.01e-01 73.4% 30.0%
3684918 6043.1.1.0 ↗ a+b two layers › yfeY-like › yfeY-like › yfeY-like 0.61 35.0 3.80e-01 77.2% 67.7%
4972031 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.60 42.0 3.52e-01 72.2% 100.0%
3710725 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.60 51.0 3.21e-01 93.7% 27.1%
3427749 295.1.1.3 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PurA 0.60 43.0 4.67e-01 93.7% 95.4%
5052436 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.59 36.0 3.67e-01 73.4% 60.0%
4962615 319.1.1.4 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › ArsA_HSP20 0.59 36.0 3.46e-01 73.4% 50.5%
3521669 220.1.1.155 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PF26658 0.59 41.0 3.73e-01 72.2% 71.4%
4340612 4263.2.1.0 ↗ a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain 0.58 38.0 4.09e-01 72.2% 81.5%
4943404 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.58 44.0 3.75e-01 82.3% 73.1%
4029439 252.2.1.0 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.58 36.0 3.79e-01 89.9% 71.0%
3655368 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.57 38.0 3.89e-01 72.2% 70.7%
4390303 5.1.3.238 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › PF29568 0.57 44.0 2.62e-01 83.5% 13.3%
3925891 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 41.0 3.98e-01 75.9% 84.4%
None — 0.57 42.0 3.45e-01 81.0% 43.0%
3286982 330.6.1.0 ↗ a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 0.57 42.0 3.92e-01 81.0% 76.9%
1144827 4.1.1.79 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3601 0.57 46.0 4.47e-01 87.3% 84.3%
3931122 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 42.0 3.99e-01 78.5% 81.1%
3436093 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.57 39.0 3.97e-01 75.9% 74.7%
3995633 211.1.1.7 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase_4 0.57 40.0 3.44e-01 79.7% 45.4%
3589823 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.56 41.0 4.40e-01 97.5% 95.4%
4030681 252.2.1.1 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › AP2 0.56 34.0 3.68e-01 89.9% 72.3%
4026008 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.56 37.0 3.70e-01 72.2% 64.7%
4995609 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 46.0 3.80e-01 91.1% 95.2%
4838661 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.56 36.0 3.32e-01 72.2% 47.7%
1141882 4099.1.1.3 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Spc24 0.56 32.0 3.33e-01 78.5% 59.2%
3728783 223.2.1.15 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Longin 0.55 44.0 3.66e-01 92.4% 48.6%
4027723 252.2.1.0 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.55 36.0 3.81e-01 83.5% 74.3%
3713627 5.1.4.6 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,ANAPC4_WD40 0.55 44.0 2.93e-01 84.8% 23.0%
3304346 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.55 36.0 3.81e-01 72.2% 75.7%
3612557 5.1.4.6 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,ANAPC4_WD40 0.54 45.0 3.02e-01 92.4% 23.6%
3271779 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 39.0 3.20e-01 75.9% 41.4%
4997408 2004.1.1.67 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CbiA 0.54 46.0 3.28e-01 96.2% 84.0%
3925367 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 38.0 3.15e-01 74.7% 60.0%
3314422 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.54 35.0 3.69e-01 72.2% 75.7%
3396193 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.53 38.0 3.23e-01 74.7% 50.8%
943 220.1.1.47 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_16 0.53 39.0 3.58e-01 77.2% 84.0%
4485741 5.1.5.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.53 38.0 2.30e-01 79.7% 24.5%
3742185 2003.1.5.26 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_28 0.52 44.0 2.88e-01 96.2% 70.6%
3924099 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.52 37.0 2.61e-01 73.4% 24.7%
5013176 4100.1.1.0 ↗ a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.52 32.0 3.31e-01 83.5% 65.3%
3929033 59.1.1.0 ↗ beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like 0.51 41.0 4.12e-01 97.5% 87.5%
3256023 4026.1.1.0 ↗ a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) 0.51 44.0 3.73e-01 97.5% 72.6%
5061930 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 38.0 3.56e-01 78.5% 74.7%
4981790 298.1.1.0 ↗ a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 0.50 44.0 3.78e-01 100.0% 76.9%
4430771 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.50 41.0 3.50e-01 94.9% 94.5%