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NC_014792.1__YP_004063767.1__VR7_gp086__00086

Bact-Vir

NC_014792.1__YP_004063767.1__VR7_gp086__00086

Identity

Accession:
NC_014792 ↗
Kingdom:
phage

Quality

89.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Gaprivervirus› Escherichia_phage_vB_EcoM_VR7

TaxID: 700939

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-127
PDB
Domain cluster: rep: MT778839.1__QNH71827.1__P9VFCI_165__00165__D6-122
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4gpkB01 1.25.40.1000 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.62 40.0 4.34e-01 84.9% 78.8%
6orcB00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.59 41.0 3.94e-01 100.0% 63.4%
1ihgA02 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.58 41.0 3.83e-01 89.9% 58.6%
8fnyA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.56 44.0 3.69e-01 100.0% 48.5%
1hxiA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.54 40.0 4.14e-01 100.0% 83.0%
1iygA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.53 44.0 4.26e-01 89.9% 88.7%
4flbA00 1.25.40.90 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.53 41.0 3.96e-01 80.7% 77.1%
2i2xB01 1.10.1240.10 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain 0.52 37.0 4.05e-01 80.7% 88.0%
2d9dA00 1.20.58.120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain 0.52 35.0 3.90e-01 77.3% 92.1%
7zb5E01 3.40.50.10810 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Tandem AAA-ATPase domain 0.51 46.0 3.45e-01 100.0% 45.3%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3282465 5069.1.3.0 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits 0.69 31.0 3.50e-01 91.6% 52.6%
4027110 109.4.1.195 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_11 0.63 44.0 3.46e-01 93.3% 34.7%
4003482 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.60 44.0 2.92e-01 75.6% 40.2%
3229310 109.4.1.217 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fis1_TPR_N,Fis1_TPR_C 0.59 40.0 4.05e-01 88.2% 69.2%
3453247 109.59.1.7 ↗ alpha superhelices › Repetitive alpha hairpins › Intraflagellar transport protein 80 (IFT80) C-terminal domain › Intraflagellar transport protein 80 (IFT80) C-terminal domain › PPR_2 0.59 38.0 4.13e-01 89.9% 80.9%
3653172 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.59 41.0 3.97e-01 95.8% 63.0%
3377784 109.4.1.189 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_2 0.58 37.0 4.04e-01 86.6% 80.0%
3174817 133.1.1.1 ↗ alpha bundles › DH domain-like › DBL homology domain (DH-domain) › DBL homology domain (DH-domain) › RhoGEF 0.57 41.0 3.40e-01 75.6% 88.9%
3379149 109.4.1.1256 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3 0.57 37.0 4.01e-01 95.0% 79.0%
3564606 604.1.1.60 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Stereocilin 0.57 44.0 3.97e-01 83.2% 77.6%
3256661 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.54 48.0 4.35e-01 100.0% 91.5%
3244085 109.54.1.1 ↗ alpha superhelices › Repetitive alpha hairpins › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › Utp12 0.53 43.0 3.92e-01 88.2% 81.9%
3627077 3896.1.1.1 ↗ alpha duplicates or obligate multimers › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase › CTP_transf_1 0.52 43.0 3.14e-01 91.6% 83.2%
5013043 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 46.0 3.75e-01 99.2% 64.4%
4014587 109.4.1.94 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ANTH 0.51 39.0 3.52e-01 84.0% 59.4%
3331938 192.8.1.0 ↗ alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.50 29.0 3.50e-01 95.0% 85.0%
3340569 7515.1.1.2 ↗ a/b three-layered sandwiches › Alkaline phosphatase-like › Alkaline phosphatase-like › Alkaline phosphatase-like › Sulfatase 0.50 41.0 2.90e-01 89.9% 87.3%
D2 high residues 130-225
PDB
Domain cluster: representative
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5x6vG00 3.30.450.190 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.60 34.0 3.02e-01 100.0% 40.2%
2conA00 6.20.210.10 Special › Other non-globular › Herpes Virus-1 › Nin one binding (NOB1), Zn-ribbon-like 0.58 32.0 3.49e-01 81.2% 64.6%
4b43A01 1.10.10.2480 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.57 39.0 4.58e-01 88.5% 100.0%
2vugA02 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.55 31.0 3.54e-01 80.2% 75.0%
2b9lA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.54 33.0 2.85e-01 82.3% 38.2%
2zhgA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.53 44.0 4.09e-01 100.0% 71.1%
5d1oA02 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.52 30.0 3.45e-01 80.2% 76.7%
2bcfA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.51 37.0 2.74e-01 76.0% 83.1%
1mkmB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 32.0 3.55e-01 75.0% 80.3%
4aqlA01 2.30.40.10 Mainly Beta › Roll › Urease, subunit C; domain 1 › Urease, subunit C, domain 1 0.50 42.0 3.82e-01 91.7% 69.5%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4018561 223.2.1.10 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Gtr1_RagA 0.63 35.0 3.02e-01 100.0% 36.6%
5010023 223.2.1.60 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › DUF2173 0.61 36.0 3.44e-01 100.0% 50.0%
3731212 192.24.1.0 ↗ alpha bundles › Long alpha-hairpin › RPC62 helical hairpin domain › RPC62 helical hairpin domain 0.61 37.0 3.95e-01 100.0% 69.4%
4977323 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.59 33.0 3.03e-01 95.8% 42.4%
5077132 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.57 31.0 2.80e-01 93.8% 38.5%
3278560 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 32.0 2.93e-01 100.0% 45.5%
3736912 223.2.1.10 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Gtr1_RagA 0.52 31.0 2.83e-01 97.9% 42.3%