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NC_015157.1__YP_004250959.1__ViPhICP1_gp018__00018

Bact-Vir

NC_015157.1__YP_004250959.1__ViPhICP1_gp018__00018

Identity

Accession:
NC_015157 ↗
Kingdom:
phage

Quality

93.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Mohonavirus› Vibrio_phage_ICP1

TaxID: 979525

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-87
PDB
Domain cluster: rep: LC576631.1__BCK59706.1__X__00011__D8-89
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2mcfA00 3.40.50.11630 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.68 61.0 5.04e-01 100.0% 58.8%
3bk5A00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.65 57.0 4.19e-01 100.0% 84.3%
3nziA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.64 41.0 3.79e-01 100.0% 51.9%
4gdnC00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.63 45.0 3.08e-01 76.2% 80.9%
2py5A01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.63 44.0 3.44e-01 73.8% 65.2%
1m0wA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.63 37.0 3.44e-01 98.8% 45.4%
4e6xB00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.62 45.0 3.10e-01 76.2% 80.1%
3v8uA02 2.40.160.90 Mainly Beta › Beta Barrel › Porin › 0.61 54.0 4.26e-01 100.0% 92.2%
2d73A03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.61 37.0 3.38e-01 100.0% 45.1%
5cxwA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.61 55.0 3.56e-01 100.0% 69.9%
4mxtA00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.60 53.0 4.16e-01 100.0% 75.4%
3holA02 2.40.160.90 Mainly Beta › Beta Barrel › Porin › 0.60 52.0 4.26e-01 100.0% 88.0%
3pquA02 2.40.160.90 Mainly Beta › Beta Barrel › Porin › 0.60 51.0 4.14e-01 100.0% 88.7%
3tzgA00 2.40.160.150 Mainly Beta › Beta Barrel › Porin › 0.59 53.0 3.80e-01 100.0% 97.5%
4grhA00 3.60.120.10 Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase 0.58 41.0 2.61e-01 73.8% 31.1%
2v43A01 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.58 52.0 4.08e-01 100.0% 79.2%
3jamD02 3.30.1140.32 Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › Ribosomal protein S3, C-terminal domain 0.58 40.0 3.40e-01 100.0% 45.1%
3au0A01 2.60.40.1280 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 41.0 3.38e-01 97.6% 42.3%
4wiwA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.57 43.0 4.65e-01 95.2% 100.0%
3zg9B02 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.56 43.0 2.86e-01 83.3% 69.9%
6mjjC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 41.0 3.66e-01 97.6% 57.0%
6kjcA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.54 48.0 3.07e-01 100.0% 86.9%
1vwxS01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.53 35.0 3.83e-01 100.0% 81.7%
2jwyA01 2.60.40.1620 Mainly Beta › Sandwich › Immunoglobulin-like › Lipoprotein YajI-like 0.52 38.0 3.23e-01 100.0% 47.4%
2nmsA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 40.0 3.60e-01 100.0% 60.7%
2yrbA01 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.52 43.0 3.81e-01 97.6% 99.3%
1q8mA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 41.0 3.55e-01 98.8% 58.7%
6p3xB01 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.51 43.0 3.48e-01 97.6% 71.2%
6hmjA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.50 45.0 4.18e-01 96.4% 94.3%
ECOD (39)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3755463 382.1.1.1 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › UPAR_LY6 0.84 50.0 4.91e-01 100.0% 56.7%
3857127 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.84 50.0 5.03e-01 100.0% 60.0%
5080210 71.1.1.8 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA_like 0.74 69.0 4.96e-01 100.0% 82.3%
3243866 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.71 54.0 5.09e-01 100.0% 67.0%
4447649 71.1.1.8 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA_like 0.70 62.0 4.53e-01 100.0% 84.3%
4197307 71.1.1.3 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB 0.68 62.0 4.91e-01 100.0% 91.5%
1348619 6149.1.1.0 ↗ 0.68 61.0 5.04e-01 100.0% 58.8%
166902 71.1.1.8 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA_like 0.65 57.0 4.19e-01 100.0% 84.3%
3786204 880.1.1.1 ↗ a+b duplicates or obligate multimers › ADC synthase › ADC synthase › ADC synthase › Chorismate_bind 0.63 46.0 2.84e-01 77.4% 33.3%
3721503 11.1.1.68 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ASF1_hist_chap 0.63 46.0 3.64e-01 76.2% 77.6%
3483333 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 38.0 3.59e-01 100.0% 53.0%
3657616 880.1.1.1 ↗ a+b duplicates or obligate multimers › ADC synthase › ADC synthase › ADC synthase › Chorismate_bind 0.60 47.0 2.92e-01 85.7% 32.4%
4022776 880.1.1.1 ↗ a+b duplicates or obligate multimers › ADC synthase › ADC synthase › ADC synthase › Chorismate_bind 0.59 46.0 2.86e-01 83.3% 35.1%
4642338 807.1.1.1 ↗ a+b two layers › Allophycocyanin linker chain (domain) › Allophycocyanin linker chain (domain) › Allophycocyanin linker chain (domain) › CpcD 0.59 35.0 4.24e-01 100.0% 94.3%
3491662 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 31.0 3.33e-01 100.0% 58.1%
5033844 71.1.1.8 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA_like 0.59 53.0 3.84e-01 100.0% 81.2%
3389906 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.58 40.0 3.83e-01 100.0% 61.0%
3241382 10.40.1.1 ↗ beta sandwiches › jelly-roll › PHR domain › PHR domain › PHR 0.57 45.0 3.60e-01 84.5% 59.4%
3166921 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.57 48.0 3.21e-01 100.0% 23.8%
3281184 2492.1.1.35 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › DUF4192 0.56 42.0 3.42e-01 81.0% 73.5%
3410856 11.2.1.38 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › Bfc 0.55 49.0 4.01e-01 97.6% 96.7%
3472961 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.55 51.0 4.16e-01 100.0% 57.3%
5061151 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.55 44.0 3.77e-01 100.0% 52.9%
3887913 223.2.1.40 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › DENN 0.54 49.0 3.96e-01 98.8% 56.1%
3623902 223.2.1.4 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › DENN,uDENN 0.54 49.0 3.95e-01 100.0% 55.6%
3621501 10.2.1.0 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.54 40.0 2.95e-01 100.0% 31.4%
3408263 11.1.1.822 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF229 0.54 40.0 3.86e-01 88.1% 68.4%
3395613 11.1.1.536 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF1091 0.53 48.0 3.80e-01 100.0% 95.2%
3396255 11.1.1.822 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF229 0.53 38.0 3.56e-01 86.9% 61.0%
4644377 223.1.1.122 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › HisKA 0.52 49.0 3.41e-01 100.0% 37.1%
3181741 11.1.1.203 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LacZ_4 0.52 40.0 3.61e-01 100.0% 60.9%
3226303 223.2.1.6 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › uDENN 0.52 47.0 3.74e-01 100.0% 52.9%
3410193 11.1.1.536 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF1091 0.52 44.0 3.56e-01 90.5% 72.9%
3407995 11.1.1.536 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF1091 0.51 43.0 3.49e-01 90.5% 74.2%
4623906 314.1.1.12 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › LplA-B_cat 0.51 44.0 3.14e-01 94.0% 80.0%
3932109 382.1.1.13 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › Ly-6_related 0.51 43.0 3.69e-01 100.0% 56.4%
4221307 880.1.1.1 ↗ a+b duplicates or obligate multimers › ADC synthase › ADC synthase › ADC synthase › Chorismate_bind 0.51 46.0 2.84e-01 100.0% 32.8%
1145775 3268.1.1.1 ↗ a+b two layers › N-terminal domain in xanthine dehydrogenase › N-terminal domain in xanthine dehydrogenase › N-terminal domain in xanthine dehydrogenase › XdhC_CoxI 0.50 40.0 4.05e-01 100.0% 84.7%
3593291 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.50 44.0 3.73e-01 100.0% 63.4%