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NC_015157.1__YP_004250978.1__ViPhICP1_gp037__00037

Bact-Vir

NC_015157.1__YP_004250978.1__ViPhICP1_gp037__00037

Identity

Accession:
NC_015157 ↗
Kingdom:
phage

Quality

87.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Mohonavirus› Vibrio_phage_ICP1

TaxID: 979525

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-76
PDB
Domain cluster: rep: MG592441.1__AUR84737.1__NVP1063O_070__00070__D2-70
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2lccA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 45.0 4.52e-01 100.0% 72.4%
2f5kA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 43.0 4.95e-01 98.6% 100.0%
2efiA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 41.0 3.76e-01 100.0% 50.0%
6bogA02 2.30.30.930 Mainly Beta › Roll › SH3 type barrels. › 0.60 39.0 4.27e-01 100.0% 83.3%
1oxxK02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 34.0 4.07e-01 73.0% 88.9%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.59 41.0 4.31e-01 100.0% 83.1%
4qa8A00 2.50.20.20 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › 0.59 50.0 3.66e-01 97.3% 80.0%
1nvpD02 2.30.18.10 Mainly Beta › Roll › TATA box binding Protein, subunit D; domain 2 › Transcription factor IIA (TFIIA), beta-barrel domain 0.56 33.0 3.93e-01 86.5% 93.5%
3c6kA02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.56 36.0 3.95e-01 94.6% 85.7%
2byoA00 2.50.20.20 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › 0.55 45.0 3.52e-01 94.6% 83.6%
2qggA02 2.30.30.240 Mainly Beta › Roll › SH3 type barrels. › PRC-barrel domain 0.55 40.0 3.91e-01 100.0% 69.9%
3mh9A00 2.50.20.20 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › 0.54 45.0 3.37e-01 95.9% 80.0%
2m2lA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 37.0 3.92e-01 75.7% 80.6%
3ff2A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 44.0 3.85e-01 93.2% 87.2%
2pmaA01 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.54 40.0 3.46e-01 81.1% 54.5%
4b08A01 2.40.50.730 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.52 36.0 3.53e-01 71.6% 93.8%
1sp4B00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.52 45.0 3.34e-01 100.0% 37.6%
4pswA02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.51 36.0 2.96e-01 90.5% 39.8%
3gzbA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 40.0 3.34e-01 93.2% 82.5%
5vqjA00 2.60.120.180 Mainly Beta › Sandwich › Jelly Rolls › Glycoside hydrolase family 11/12, catalytic domain 0.51 39.0 2.81e-01 82.4% 39.4%
7c5yA02 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 43.0 3.43e-01 95.9% 93.5%
1o97D01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.50 39.0 2.85e-01 100.0% 32.3%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4616207 4.1.1.448 ↗ beta barrels › SH3 › SH3 › SH3 › DUF5372 0.74 46.0 5.43e-01 94.6% 94.0%
5021134 247.1.1.1 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B 0.71 39.0 2.55e-01 94.6% 12.8%
4938828 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 42.0 4.60e-01 98.6% 76.7%
4071917 4.1.1.111 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_RapA 0.64 39.0 4.46e-01 98.6% 88.0%
3283097 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.62 44.0 3.92e-01 100.0% 50.9%
3333339 4.8.1.34 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_SEND1 0.59 39.0 4.18e-01 73.0% 78.5%
3781391 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.57 43.0 4.00e-01 82.4% 81.0%
3692564 2.1.1.25 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_pol_B_exo1 0.56 42.0 2.65e-01 81.1% 24.4%
4944615 2005.1.1.17 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1f 0.56 42.0 2.86e-01 100.0% 21.1%
4031833 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.55 33.0 3.64e-01 93.2% 75.0%
4033096 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.55 35.0 3.62e-01 86.5% 68.6%
5028142 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 38.0 2.45e-01 95.9% 16.6%
4448182 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.54 34.0 3.66e-01 86.5% 73.8%
3285269 211.1.1.11 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase_6 0.53 37.0 3.21e-01 74.3% 81.7%
3516722 219.1.1.1 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.53 43.0 2.57e-01 100.0% 11.4%
4507276 2.4.1.11 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3 0.53 39.0 3.42e-01 78.4% 71.3%
3578603 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.52 42.0 4.15e-01 100.0% 83.7%
4523548 4.8.1.35 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › DUF1292 0.51 40.0 3.87e-01 94.6% 74.1%