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NC_015157.1__YP_004251032.1__ViPhICP1_gp091__00091

Bact-Vir

Identity

Accession:: NC_015157 ↗
Kingdom:: phage

Quality

81.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Mohonavirus› Vibrio_phage_ICP1

TaxID: 979525

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-99_177-183

PDB

Domain cluster: representative

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2o7iA01	3.40.190.10	Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II	0.51	35.0	3.02e-01	70.2%	86.0%

D2 high residues 108-170

PDB

Domain cluster: representative

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4954479	2003.1.5.42 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_21	0.51	39.0	2.61e-01	82.5%	78.5%
3695698	3692.1.1.0 ↗	a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain	0.50	36.0	2.85e-01	77.8%	80.7%

D3 medium residues 186-217

PDB

Domain cluster: representative

CATH (10)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5hwoA00	3.40.47.10	Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase	0.62	48.0	2.75e-01	96.9%	87.3%
1tvzA01	3.40.47.10	Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase	0.57	45.0	2.78e-01	96.9%	79.2%
7szeB01	2.102.10.10	Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain	0.57	40.0	3.02e-01	90.6%	99.1%
3nemA01	2.40.50.140	Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins	0.54	38.0	2.79e-01	81.2%	72.4%
4glaC00	2.40.50.140	Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins	0.53	37.0	2.86e-01	81.2%	87.6%
1mufA01	2.20.110.10	Mainly Beta › Single Sheet › Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain › Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain	0.51	38.0	2.83e-01	100.0%	38.9%
7r97A02	3.30.160.20	Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain ›	0.51	35.0	3.09e-01	87.5%	42.6%
3askA02	2.30.30.1150	Mainly Beta › Roll › SH3 type barrels. ›	0.51	35.0	2.43e-01	78.1%	27.8%
4b5qA00	2.70.50.70	Mainly Beta › Distorted Sandwich › Coagulation Factor XIII; Chain A, domain 1 ›	0.50	36.0	2.32e-01	87.5%	57.1%
4ia6B01	3.50.50.60	Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain	0.50	37.0	2.29e-01	96.9%	75.1%

ECOD (10)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3385896	2.1.1.7 ↗	beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1	0.53	43.0	3.32e-01	100.0%	51.2%
4570706	2003.1.3.1 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO	0.52	33.0	2.03e-01	100.0%	25.4%
3839910	2.1.1.7 ↗	beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1	0.51	42.0	3.46e-01	96.9%	58.7%
4386372	2003.1.2.23 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › MCRA	0.51	36.0	2.06e-01	84.4%	5.9%
4590247	4.6.1.2 ↗	beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC	0.51	36.0	2.89e-01	84.4%	33.8%
5048394	375.1.1.0 ↗	few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related	0.51	38.0	3.61e-01	96.9%	88.9%
4938531	247.1.1.30 ↗	a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Anti-Pycsar_Apyc1	0.51	38.0	2.57e-01	100.0%	56.6%
3636285	220.1.1.201 ↗	beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF7493	0.50	38.0	3.23e-01	93.8%	56.9%
4977260	2004.1.1.0 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases	0.50	37.0	2.42e-01	100.0%	17.2%
5071241	247.1.1.11 ↗	a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_2	0.50	41.0	2.53e-01	100.0%	31.8%