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NC_015157.1__YP_004251033.1__ViPhICP1_gp092__00092

Bact-Vir

NC_015157.1__YP_004251033.1__ViPhICP1_gp092__00092

Identity

Accession:
NC_015157 ↗
Kingdom:
phage

Quality

95.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Mohonavirus› Vibrio_phage_ICP1

TaxID: 979525

Cluster

View cluster (35 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 20-108
PDB
Domain cluster: rep: ON615601.1__UTS51982.1__X__00034__D5-121
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6i6rB03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 42.0 4.12e-01 83.1% 62.6%
2vf9A00 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.62 33.0 2.87e-01 100.0% 33.6%
3gm8A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 44.0 4.22e-01 83.1% 63.8%
2je8A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 46.0 4.30e-01 83.1% 65.5%
7pjjA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 47.0 4.19e-01 88.8% 59.2%
3butA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 44.0 3.96e-01 82.0% 60.0%
5utkA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 38.0 3.82e-01 80.9% 66.7%
3ebwA01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.57 34.0 2.96e-01 100.0% 37.3%
6r3wA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 37.0 3.12e-01 100.0% 38.5%
4nn5C02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 39.0 3.84e-01 85.4% 68.7%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.54 27.0 3.28e-01 100.0% 75.0%
6rpxA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 36.0 3.69e-01 82.0% 70.6%
6c98A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 37.0 3.76e-01 82.0% 71.4%
1ja1A02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.54 40.0 3.72e-01 94.4% 60.7%
2wc7A02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.53 40.0 4.15e-01 97.8% 89.9%
3mnmA00 2.60.40.1230 Mainly Beta › Sandwich › Immunoglobulin-like › Gamma-adaptin ear (GAE) domain 0.53 42.0 3.94e-01 100.0% 69.6%
1tulA00 2.70.40.20 Mainly Beta › Distorted Sandwich › Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A › Baculovirus telokin-like protein 20 0.52 39.0 3.84e-01 83.1% 97.1%
2bsyA01 2.70.40.10 Mainly Beta › Distorted Sandwich › Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A › Deoxyuridine triphosphatase (dUTPase) 0.51 39.0 3.37e-01 97.8% 51.0%
2mizA00 2.60.40.2900 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 38.0 3.29e-01 83.1% 66.7%
2z1kA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.51 40.0 4.10e-01 96.6% 90.6%
1cbyA00 3.40.198.10 Alpha Beta › 3-Layer(aba) Sandwich › Delta-endotoxin CytB › Delta-endotoxin CytB-like 0.50 35.0 2.70e-01 74.2% 64.3%
ECOD (45)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4932865 3899.1.1.0 ↗ beta complex topology › Baseplate structural protein gp8 › Baseplate structural protein gp8 › Baseplate structural protein gp8 0.77 70.0 6.00e-01 100.0% 72.1%
4928608 3899.1.1.0 ↗ beta complex topology › Baseplate structural protein gp8 › Baseplate structural protein gp8 › Baseplate structural protein gp8 0.76 69.0 5.64e-01 100.0% 59.1%
4935045 11.1.1.51 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LEA_2 0.64 49.0 4.25e-01 83.1% 53.1%
5034688 11.1.1.51 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LEA_2 0.64 49.0 4.19e-01 83.1% 52.4%
4996989 11.1.1.14 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Glyco_hydro_2 0.63 48.0 4.61e-01 83.1% 69.5%
5079861 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.63 49.0 4.50e-01 83.1% 67.8%
4671861 11.1.1.14 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Glyco_hydro_2 0.62 45.0 4.37e-01 83.1% 68.0%
1588 11.1.1.14 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Glyco_hydro_2 0.61 46.0 4.29e-01 83.1% 64.9%
2172926 11.1.1.182 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Fn3-like 0.61 46.0 4.09e-01 80.9% 57.5%
4240632 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.60 46.0 3.82e-01 82.0% 78.5%
5083245 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 46.0 4.32e-01 85.4% 67.3%
5033004 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 45.0 4.15e-01 83.1% 63.3%
4942296 11.1.1.103 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CARDB 0.59 46.0 4.36e-01 83.1% 72.4%
4955131 11.1.1.51 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LEA_2 0.59 45.0 3.93e-01 83.1% 53.6%
3581739 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.59 40.0 3.96e-01 86.5% 66.3%
5018601 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 43.0 4.14e-01 83.1% 69.0%
222987 9.24.1.1 ↗ beta barrels › Lipocalins/Streptavidin › hypothetical protein BACOVA_00364 › hypothetical protein BACOVA_00364 › DUF4488 0.58 39.0 3.37e-01 100.0% 43.0%
3488516 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.57 38.0 3.63e-01 83.1% 58.1%
3743256 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 42.0 3.98e-01 83.1% 64.5%
4078175 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 43.0 4.25e-01 82.0% 78.9%
5005564 11.1.1.1424 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7490 0.56 42.0 4.14e-01 83.1% 73.0%
3700664 1.1.7.7 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.56 42.0 4.12e-01 92.1% 72.0%
4946540 12.3.1.13 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_38C 0.56 49.0 3.57e-01 100.0% 90.0%
4000819 708.1.1.4 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FLYWCH 0.56 30.0 3.31e-01 100.0% 65.7%
2773775 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 39.0 3.45e-01 86.5% 46.9%
5000149 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 43.0 3.85e-01 85.4% 59.2%
3738620 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 41.0 3.70e-01 82.0% 65.9%
4383512 11.1.1.1268 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF27154 0.55 42.0 4.15e-01 80.9% 77.7%
5048975 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.55 46.0 4.51e-01 94.4% 97.0%
3413761 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.55 43.0 3.74e-01 86.5% 55.2%
5013082 11.1.1.51 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LEA_2 0.55 42.0 3.75e-01 84.3% 57.0%
3188712 4.1.1.225 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7025 0.55 36.0 3.55e-01 100.0% 61.0%
5002919 11.1.1.1268 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF27154 0.55 43.0 4.09e-01 92.1% 72.4%
3573755 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.54 37.0 3.26e-01 84.3% 45.9%
3541348 11.1.1.538 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CHRD 0.54 44.0 4.00e-01 100.0% 64.8%
5007992 11.1.1.51 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LEA_2 0.53 41.0 3.68e-01 84.3% 58.5%
3197517 219.1.1.129 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF7770 0.53 33.0 3.08e-01 100.0% 46.6%
4964628 11.1.1.51 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LEA_2 0.52 45.0 3.90e-01 100.0% 66.0%
5032027 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 41.0 3.51e-01 86.5% 60.7%
3756408 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.52 35.0 3.46e-01 83.1% 63.0%
3633294 219.1.1.93 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF6540 0.52 35.0 3.13e-01 70.8% 94.9%
4251101 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 30.0 3.07e-01 100.0% 57.6%
3178419 11.1.1.378 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Rgp1 0.50 44.0 3.67e-01 100.0% 67.3%
3931300 4099.1.1.0 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.50 33.0 3.33e-01 100.0% 66.7%
3619455 4099.1.1.0 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.50 32.0 3.14e-01 100.0% 58.9%