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NC_015157.1__YP_004251067.1__ViPhICP1_gp126__00126

Bact-Vir

NC_015157.1__YP_004251067.1__ViPhICP1_gp126__00126

Identity

Accession:
NC_015157 ↗
Kingdom:
phage

Quality

88.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Mohonavirus› Vibrio_phage_ICP1

TaxID: 979525

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 47-142
PDB
Domain cluster: rep: IMGVR_UViG_3300026311_000146-3300026311-Ga0209723_100647318__D183-300
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF14550.12 best Peptidase_S78_2 33.5 5.90e-08 99.0% 69.5%
D2 high residues 175-260
PDB
Domain cluster: rep: Salt_Pond_R2_restored_H2O_MG_scaffold_3_prodigal-single.1__X__X__00211__D298-386
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3kmuA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.55 41.0 4.10e-01 79.1% 85.1%
4p78C00 3.30.920.30 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. 0.53 32.0 3.58e-01 76.7% 78.8%
3vpbE00 2.20.28.160 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.53 34.0 3.83e-01 97.7% 98.2%
2fokA03 3.40.91.30 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › 0.50 38.0 3.11e-01 83.7% 68.6%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4484893 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 27.0 3.11e-01 76.7% 52.3%
4026577 252.2.1.1 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › AP2 0.59 34.0 3.97e-01 90.7% 85.5%
3992248 391.1.2.9 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › Fn1_2 0.58 33.0 4.12e-01 93.0% 100.0%
4028791 252.2.1.1 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › AP2 0.58 31.0 3.65e-01 77.9% 78.2%
4027687 330.3.1.0 ↗ a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like 0.58 31.0 3.68e-01 80.2% 80.0%
4026211 252.2.1.1 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › AP2 0.58 31.0 3.74e-01 76.7% 86.0%
3684918 6043.1.1.0 ↗ a+b two layers › yfeY-like › yfeY-like › yfeY-like 0.57 29.0 3.32e-01 75.6% 64.6%
3720000 330.16.1.0 ↗ a+b two layers › dsRBD-like › ODA16 N-terminal domain › ODA16 N-terminal domain 0.56 39.0 4.21e-01 80.2% 90.0%
3252808 1170.1.2.0 ↗ beta barrels › IL8-related › IL8-related › chemokine-related domain in glycoprotein L (gL) 0.56 30.0 3.25e-01 80.2% 60.0%
4090709 101.1.2.8 ↗ alpha arrays › HTH › HTH › winged helix domain › Trans_reg_C 0.53 40.0 3.75e-01 81.4% 92.7%
3558557 330.16.1.0 ↗ a+b two layers › dsRBD-like › ODA16 N-terminal domain › ODA16 N-terminal domain 0.53 37.0 3.88e-01 80.2% 82.7%
4028013 252.2.1.1 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › AP2 0.53 30.0 3.17e-01 81.4% 61.3%
4485741 5.1.5.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.52 35.0 2.14e-01 72.1% 28.1%
4644747 330.16.1.0 ↗ a+b two layers › dsRBD-like › ODA16 N-terminal domain › ODA16 N-terminal domain 0.52 36.0 3.78e-01 80.2% 81.2%
5002845 192.8.1.0 ↗ alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.52 30.0 2.80e-01 77.9% 40.0%
5004622 2008.1.1.16 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Mrr_cat 0.51 38.0 3.46e-01 83.7% 75.2%