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NC_015251.1__YP_004300978.1__ST65p141__00140

Bact-Vir

NC_015251.1__YP_004300978.1__ST65p141__00140

Identity

Accession:
NC_015251 ↗
Kingdom:
phage

Quality

87.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-82
PDB
CATH (56)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3uaqB02 2.40.160.90 Mainly Beta › Beta Barrel › Porin › 0.71 61.0 4.84e-01 94.9% 93.9%
1mmuA00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.70 58.0 3.73e-01 88.6% 98.5%
3mswA00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.70 58.0 4.74e-01 88.6% 70.5%
3imhA00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.68 55.0 3.63e-01 88.6% 92.5%
3pquA02 2.40.160.90 Mainly Beta › Beta Barrel › Porin › 0.68 60.0 4.65e-01 98.7% 91.0%
3ke6B01 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.66 59.0 4.26e-01 100.0% 75.6%
2gu1A02 3.10.450.350 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.64 44.0 4.07e-01 70.9% 90.4%
4kt3B00 3.10.450.170 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › type vi secretion system effector-immunity co pseudomonas protegens 0.64 55.0 4.64e-01 93.7% 65.6%
3bcyA00 3.40.1000.40 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Respiratory growth induced protein 1 0.64 47.0 3.86e-01 78.5% 52.1%
2fpnA02 3.30.360.40 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › YwmB-like 0.63 47.0 5.07e-01 81.0% 95.4%
3v8uA02 2.40.160.90 Mainly Beta › Beta Barrel › Porin › 0.63 56.0 4.31e-01 98.7% 93.3%
3djwA00 3.30.160.300 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.63 45.0 4.24e-01 74.7% 63.2%
2h36X00 3.30.160.300 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.62 46.0 4.14e-01 77.2% 56.5%
3natA01 3.40.50.11250 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Protein of unknown function DUF3013 0.62 53.0 4.43e-01 100.0% 63.3%
4jglA00 2.40.128.530 Mainly Beta › Beta Barrel › Lipocalin › 0.62 52.0 4.18e-01 91.1% 78.9%
7clyA01 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.61 54.0 4.21e-01 100.0% 90.3%
3hk4A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 44.0 3.88e-01 77.2% 94.1%
1bp1A01 3.15.10.10 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 0.60 50.0 3.91e-01 93.7% 98.3%
4osnA00 2.30.29.100 Mainly Beta › Roll › PH-domain like › 0.60 42.0 3.75e-01 73.4% 94.5%
4jgwA01 1.20.870.10 Mainly Alpha › Up-down Bundle › Son of sevenless (SoS) protein; Chain S, domain 1 › Son of sevenless (SoS) protein Chain: S domain 1 0.60 42.0 3.41e-01 73.4% 44.9%
1bf5A04 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.59 39.0 3.53e-01 87.3% 46.9%
3gwrB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 43.0 3.71e-01 77.2% 92.1%
2rfrA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 44.0 3.67e-01 83.5% 83.1%
6n8pA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 50.0 3.22e-01 93.7% 93.5%
1ah5A03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.59 46.0 4.48e-01 100.0% 77.9%
7c5yA02 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 41.0 3.40e-01 75.9% 100.0%
5ig0A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 41.0 3.56e-01 77.2% 95.4%
5b7gA00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.57 50.0 3.58e-01 100.0% 92.4%
2bbhA01 3.30.460.20 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › CorA soluble domain-like 0.57 39.0 3.15e-01 83.5% 37.1%
3ke7B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 42.0 3.57e-01 78.5% 86.5%
2kxgA00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 41.0 3.87e-01 77.2% 81.1%
1bh3A00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.56 48.0 3.26e-01 93.7% 44.6%
3ip3A02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.56 46.0 3.44e-01 91.1% 72.9%
1luiA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.55 47.0 4.33e-01 100.0% 86.1%
3d4eA02 3.30.1450.10 Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › 0.55 39.0 3.94e-01 74.7% 75.6%
3ottA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 42.0 2.81e-01 81.0% 51.2%
2bhvB01 2.40.128.260 Mainly Beta › Beta Barrel › Lipocalin › Type IV secretion system, VirB10/TraB/TrbI 0.55 41.0 3.38e-01 83.5% 84.5%
3wodG00 2.30.30.1250 Mainly Beta › Roll › SH3 type barrels. › 0.54 46.0 3.95e-01 93.7% 73.2%
1ln1A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.54 46.0 3.56e-01 100.0% 66.0%
2i45D00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.54 44.0 4.06e-01 86.1% 71.7%
3lxqA01 3.30.1120.80 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.54 45.0 4.22e-01 98.7% 72.7%
4o1sA00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.54 43.0 3.34e-01 84.8% 81.2%
2giaA00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.54 44.0 3.59e-01 91.1% 68.8%
3kspA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 39.0 3.37e-01 77.2% 89.9%
2nn5A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.54 45.0 3.66e-01 100.0% 60.2%
4v0hD00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.53 41.0 2.98e-01 82.3% 45.7%
3htyA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.53 43.0 4.18e-01 94.9% 96.8%
3qc2B00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.53 42.0 2.81e-01 91.1% 56.0%
4e0aA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.52 39.0 3.25e-01 82.3% 80.1%
2hqlA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 42.0 4.04e-01 89.9% 93.4%
3sluA02 3.10.450.350 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 40.0 3.41e-01 86.1% 89.8%
7x36A01 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.51 43.0 2.95e-01 98.7% 59.7%
4rnyA02 3.10.450.350 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 43.0 3.65e-01 100.0% 88.4%
3ecrB03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.51 45.0 4.21e-01 100.0% 83.3%
2chcC00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 44.0 3.56e-01 100.0% 88.1%
1vqzA02 3.30.390.50 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain 0.50 37.0 3.62e-01 78.5% 83.0%
ECOD (61)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4971601 241.14.1.0 a+b two layers › Type III secretory system chaperone-like › SARS-unique domain-C › SARS-unique domain-C 0.79 61.0 6.42e-01 100.0% 91.4%
4124524 2484.1.1.12 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Acetate_kinase 0.75 61.0 4.44e-01 87.3% 43.4%
3767166 79.1.1.31 beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › ITI_HC_C 0.73 55.0 5.14e-01 78.5% 68.4%
3565627 11.1.1.787 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ITI_HC_C 0.73 54.0 4.00e-01 78.5% 33.3%
185577 5084.1.1.1 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › TbpB_B_D 0.71 61.0 4.81e-01 94.9% 93.9%
1238053 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.71 53.0 3.40e-01 79.7% 17.6%
3372251 6129.1.1.0 beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family 0.70 49.0 5.13e-01 72.2% 95.7%
4441646 6129.1.1.1 beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD 0.70 54.0 4.01e-01 81.0% 83.8%
3470957 109.4.1.19 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Vitellogenin_N 0.70 51.0 3.24e-01 75.9% 22.7%
3961802 243.5.1.9 a+b two layers › Cystatin-like › Amine oxidase N-terminal region › Amine oxidase N-terminal region › UPF0182 0.69 55.0 4.07e-01 86.1% 43.5%
3331676 6129.1.1.3 beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Root_cap 0.68 51.0 3.77e-01 79.7% 34.1%
3480718 5.1.4.229 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_EMC1_N 0.68 52.0 3.28e-01 81.0% 32.0%
3302477 11.1.1.851 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF26192 0.68 53.0 4.11e-01 83.5% 90.6%
3618875 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.68 61.0 5.11e-01 100.0% 78.5%
4664919 5084.1.1.1 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › TbpB_B_D 0.68 59.0 4.48e-01 98.7% 87.2%
3335639 6129.1.1.0 beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family 0.67 50.0 3.85e-01 79.7% 38.9%
4990980 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.67 48.0 4.52e-01 74.7% 70.5%
3763426 6129.1.1.1 beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD 0.67 54.0 3.98e-01 86.1% 79.5%
5014316 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.66 50.0 4.01e-01 82.3% 49.4%
3499411 2004.1.1.198 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.65 47.0 2.80e-01 74.7% 24.6%
3226910 2484.1.1.200 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FTH 0.65 51.0 3.72e-01 86.1% 30.9%
3498392 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 55.0 4.81e-01 94.9% 73.1%
3858984 6129.1.1.1 beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD 0.63 51.0 3.78e-01 86.1% 79.5%
3476117 216.1.1.4 a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.63 55.0 4.94e-01 100.0% 88.7%
3888377 6129.1.1.1 beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD 0.63 50.0 3.77e-01 84.8% 85.4%
3706175 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.62 56.0 4.87e-01 100.0% 88.3%
5063899 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.62 48.0 3.59e-01 86.1% 43.6%
3283095 4321.1.1.0 a+b two layers › Peptidoglycan deacetylase N-terminal noncatalytic region › Peptidoglycan deacetylase N-terminal noncatalytic region › Peptidoglycan deacetylase N-terminal noncatalytic region 0.62 46.0 3.49e-01 81.0% 61.8%
4003224 9.1.1.48 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_10 0.62 53.0 4.15e-01 100.0% 60.6%
4026900 331.9.1.0 a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain 0.61 52.0 4.63e-01 98.7% 65.2%
3690327 4099.1.1.2 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Spindle_Spc25 0.61 50.0 4.54e-01 93.7% 80.9%
3736128 868.1.1.8 a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › SLS1_C 0.60 54.0 3.75e-01 98.7% 79.1%
3879589 3369.1.1.2 beta meanders › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › VAS1_LD 0.60 53.0 4.15e-01 98.7% 94.1%
3410286 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.60 51.0 4.91e-01 100.0% 91.6%
1512999 3953.1.1.0 a+b two layers › Csd3 N-terminal domain › Csd3 N-terminal domain › Csd3 N-terminal domain 0.59 40.0 3.78e-01 70.9% 92.1%
3722420 2008.1.1.143 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF7924 0.59 51.0 4.15e-01 100.0% 86.9%
4984586 331.10.2.0 a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.59 51.0 4.57e-01 94.9% 74.5%
3386481 3953.1.1.0 a+b two layers › Csd3 N-terminal domain › Csd3 N-terminal domain › Csd3 N-terminal domain 0.59 40.0 3.77e-01 70.9% 93.0%
3998270 11.2.1.56 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2_PACS_N 0.59 47.0 3.70e-01 91.1% 80.0%
3450764 9.23.1.0 beta barrels › Lipocalins/Streptavidin › Hypothetical protein BT_0869 › Hypothetical protein BT_0869 0.59 51.0 4.15e-01 100.0% 72.9%
3273993 5084.5.1.0 beta barrels › Outer membrane meander beta-barrels › Porins › Porin 0.58 48.0 3.39e-01 91.1% 50.2%
5021941 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.58 51.0 3.96e-01 100.0% 65.0%
3280578 4121.1.1.1 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA 0.58 44.0 3.14e-01 82.3% 26.8%
3224183 11.2.1.56 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2_PACS_N 0.58 47.0 3.76e-01 91.1% 82.4%
3415403 11.2.1.56 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2_PACS_N 0.57 46.0 3.80e-01 91.1% 80.6%
3826932 243.3.1.26 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › protein_MS5 0.57 45.0 3.40e-01 87.3% 94.3%
3391461 3308.2.1.1 beta duplicates or obligate multimers › periplasmic lysozyme inhibitor of I-type lysozyme-like › XAC2610 protein › XAC2610 protein › 4_1_CTD 0.57 40.0 4.17e-01 74.7% 98.7%
3499540 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.57 45.0 3.63e-01 87.3% 93.8%
5027666 4121.1.1.1 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA 0.57 44.0 3.12e-01 83.5% 31.4%
3993962 11.2.1.8 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › PTEN_C2 0.56 50.0 4.08e-01 100.0% 93.1%
4346973 213.1.1.2 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1,Hat1_N 0.55 45.0 3.56e-01 93.7% 81.7%
3244753 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.55 42.0 3.28e-01 84.8% 70.5%
5065450 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 41.0 3.43e-01 86.1% 67.7%
3712993 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.53 44.0 4.49e-01 93.7% 94.7%
3188394 4.8.1.22 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › DUF7025 0.53 46.0 4.04e-01 100.0% 75.0%
3247700 209.1.1.0 a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like 0.52 36.0 3.03e-01 73.4% 93.8%
3932180 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.52 44.0 3.03e-01 98.7% 80.6%
4026006 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.52 38.0 3.87e-01 78.5% 96.2%
3494009 319.1.1.1 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.51 40.0 3.84e-01 94.9% 74.4%
3468658 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.50 40.0 2.81e-01 91.1% 44.7%
4477114 11.1.4.95 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › DUF2057 0.50 40.0 3.53e-01 93.7% 75.9%