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NC_015251.1__YP_004301008.1__ST65p171__00170

Bact-Vir

NC_015251.1__YP_004301008.1__ST65p171__00170

Identity

Accession:
NC_015251 ↗
Kingdom:
phage

Quality

72.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-78
PDB
Domain cluster: representative
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1yemB00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.75 52.0 3.99e-01 73.3% 36.1%
1mdcA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.74 51.0 4.21e-01 72.0% 43.5%
1wmiA00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.74 49.0 4.64e-01 72.0% 58.0%
8ornD01 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.73 50.0 3.74e-01 70.7% 33.5%
1x53A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.72 50.0 4.13e-01 72.0% 48.9%
1p32B00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.72 63.0 4.79e-01 96.0% 67.3%
2acaA00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.72 50.0 3.75e-01 72.0% 34.5%
6mlyB01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.72 55.0 3.77e-01 82.7% 55.0%
1ospO01 2.40.128.160 Mainly Beta › Beta Barrel › Lipocalin › C1 set domains (antibody constant domain-like) 0.71 58.0 5.17e-01 88.0% 85.7%
3ni8A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.71 49.0 4.03e-01 73.3% 47.1%
1nkgA01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.70 57.0 3.91e-01 88.0% 86.5%
7ne4A01 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.69 51.0 3.36e-01 78.7% 46.2%
1yqfB00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.69 59.0 4.51e-01 96.0% 70.6%
3rlfF03 2.40.430.10 Mainly Beta › Beta Barrel › Periplasmic binding protein-like II › D-maltodextrin-binding protein, MBP 0.68 44.0 4.19e-01 72.0% 56.8%
1ospO02 3.90.930.1 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.67 59.0 4.72e-01 97.3% 74.0%
2giaB00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.67 47.0 3.84e-01 74.7% 69.9%
3c5mA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.66 54.0 3.43e-01 89.3% 58.8%
4mf9B01 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.66 48.0 3.69e-01 77.3% 52.7%
1ekgA00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.65 58.0 4.97e-01 98.7% 91.6%
6fopA01 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.65 52.0 3.72e-01 88.0% 68.1%
5upiA01 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.64 52.0 3.87e-01 88.0% 84.0%
3qeeB00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.64 55.0 3.73e-01 98.7% 92.6%
4bbwA02 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.64 53.0 3.44e-01 93.3% 80.8%
1lfoA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.63 52.0 4.37e-01 89.3% 100.0%
2vt8A00 3.40.1000.30 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › 0.63 55.0 4.53e-01 100.0% 82.5%
2w4yA00 2.40.160.220 Mainly Beta › Beta Barrel › Porin › 0.63 55.0 4.71e-01 98.7% 89.3%
4aghA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.63 46.0 4.54e-01 78.7% 80.0%
3ovcA01 3.30.200.150 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › 0.62 45.0 4.65e-01 77.3% 98.6%
4csdB00 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.61 53.0 3.68e-01 98.7% 81.3%
2fblB00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.60 44.0 3.55e-01 78.7% 84.5%
1p6pA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.59 48.0 4.10e-01 89.3% 100.0%
7xr9E01 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.59 48.0 3.64e-01 92.0% 77.7%
4g2sA00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.59 52.0 4.59e-01 96.0% 93.4%
2fm8B00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.59 52.0 4.45e-01 100.0% 84.0%
2xqyA01 3.30.500.50 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › 0.58 41.0 3.19e-01 74.7% 83.7%
1ul7A00 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.58 49.0 4.51e-01 96.0% 75.5%
3zssA04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.58 39.0 3.73e-01 70.7% 91.1%
2qzuA02 3.30.1120.10 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.57 44.0 4.30e-01 85.3% 100.0%
2v8qA01 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.56 49.0 4.69e-01 98.7% 92.1%
4nkbA01 3.30.1120.120 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.55 46.0 4.11e-01 97.3% 84.2%
2zfdB00 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.55 49.0 4.24e-01 100.0% 66.4%
2nvnA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.54 43.0 3.68e-01 93.3% 54.2%
1cgtA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.54 39.0 3.67e-01 77.3% 66.0%
2qg7B01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.53 43.0 3.92e-01 88.0% 70.3%
2it9A00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.52 42.0 3.64e-01 94.7% 55.0%
5vxzA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 44.0 3.33e-01 94.7% 53.9%
ECOD (67)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3925827 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.75 52.0 3.63e-01 72.0% 68.4%
4404709 71.1.1.3 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB 0.75 52.0 3.93e-01 73.3% 33.7%
4203746 71.1.1.3 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB 0.74 50.0 3.76e-01 70.7% 32.2%
5012336 868.1.1.1 a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › CYTH 0.74 52.0 3.91e-01 73.3% 35.3%
3230371 3180.1.1.0 a+b two layers › LEE-encoded effector EspG N-terminal domain-related › LEE-encoded effector EspG N-terminal domain-related › LEE-encoded effector EspG N-terminal domain-related 0.73 57.0 4.99e-01 82.7% 58.2%
4221174 243.19.1.0 a+b two layers › Cystatin-like › Phi ETA orf 56-like protein C-terminal domains › Phi ETA orf 56-like protein C-terminal domains 0.72 54.0 4.98e-01 78.7% 95.8%
4419937 77.1.1.0 beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein 0.72 53.0 5.10e-01 77.3% 72.9%
4436049 1190.1.1.1 a+b two layers › Curli production assembly/transport component CsgF › Curli production assembly/transport component CsgF › Curli production assembly/transport component CsgF › CsgF 0.72 46.0 4.22e-01 98.7% 49.0%
2581425 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.72 47.0 5.32e-01 70.7% 90.9%
3915194 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.71 60.0 3.86e-01 93.3% 90.0%
4052154 71.1.1.3 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB 0.71 49.0 3.73e-01 72.0% 34.1%
3998173 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.70 50.0 4.26e-01 74.7% 75.8%
3626843 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.70 49.0 4.35e-01 74.7% 82.7%
5013018 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.69 62.0 5.16e-01 100.0% 77.7%
3215166 3180.1.1.0 a+b two layers › LEE-encoded effector EspG N-terminal domain-related › LEE-encoded effector EspG N-terminal domain-related › LEE-encoded effector EspG N-terminal domain-related 0.69 41.0 3.76e-01 74.7% 46.3%
3376441 5.1.3.6 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 0.68 52.0 3.39e-01 81.3% 41.2%
3168452 331.10.2.3 a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase › Med1 0.68 59.0 5.27e-01 96.0% 87.6%
3642213 5.1.3.6 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 0.68 51.0 3.37e-01 80.0% 39.4%
3518523 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.68 60.0 4.00e-01 97.3% 93.7%
3236870 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.68 52.0 4.36e-01 82.7% 53.1%
4954761 241.1.1.0 a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone 0.68 58.0 5.05e-01 98.7% 85.8%
4963006 4.1.1.490 beta barrels › SH3 › SH3 › SH3 › PF26269 0.67 57.0 5.48e-01 94.7% 100.0%
3383121 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.67 53.0 3.53e-01 88.0% 74.9%
3485537 5.1.4.223 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RIC1_2nd 0.67 55.0 3.32e-01 90.7% 36.3%
5035184 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.66 46.0 3.31e-01 72.0% 71.4%
3255468 5.1.2.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.66 54.0 3.85e-01 89.3% 76.9%
3247651 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.66 48.0 4.37e-01 77.3% 80.0%
3988075 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.65 50.0 3.26e-01 82.7% 28.3%
4568749 2004.1.1.585 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_15, AAA_21, AAA_23 0.65 51.0 3.27e-01 84.0% 34.0%
5014331 2004.1.1.293 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_15 0.65 51.0 2.92e-01 84.0% 16.2%
3738512 12.3.1.9 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_81 0.65 52.0 3.42e-01 86.7% 58.4%
3385295 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.65 47.0 3.35e-01 77.3% 43.4%
3394203 5.1.4.223 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RIC1_2nd 0.65 53.0 3.60e-01 90.7% 76.6%
3626089 7579.1.1.3 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S9 0.65 51.0 3.02e-01 86.7% 51.1%
3578398 4099.1.1.29 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › PF29306 0.64 56.0 4.33e-01 97.3% 53.5%
3905680 109.3.1.162 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_5 0.64 47.0 2.93e-01 77.3% 21.5%
3484246 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.64 53.0 3.39e-01 93.3% 38.4%
3737835 241.15.1.0 a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain 0.63 55.0 5.03e-01 98.7% 93.0%
3604518 3111.1.1.0 beta barrels › STT3/PglB/AglB beta-barrel domain › STT3/PglB/AglB beta-barrel domain › STT3/PglB/AglB beta-barrel domain 0.63 51.0 4.65e-01 88.0% 73.0%
4262159 2004.1.1.308 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_21 0.63 49.0 3.17e-01 84.0% 35.7%
3999576 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.63 53.0 4.40e-01 98.7% 63.4%
4128674 4252.1.1.3 beta barrels › AttH-like › AttH-like › AttH-like › DA_C 0.63 53.0 3.86e-01 94.7% 87.0%
4014909 4252.1.1.0 beta barrels › AttH-like › AttH-like › AttH-like 0.63 54.0 3.90e-01 94.7% 86.1%
3224967 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.62 47.0 3.23e-01 80.0% 25.1%
4964031 7089.1.1.7 a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › DUF7543 0.62 48.0 4.99e-01 84.0% 95.7%
3480143 241.15.1.0 a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain 0.61 53.0 4.28e-01 98.7% 78.7%
3265052 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.60 46.0 3.33e-01 85.3% 56.6%
3929502 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.60 52.0 4.82e-01 94.7% 75.5%
3467789 5.1.3.67 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.59 52.0 3.44e-01 98.7% 60.3%
3640483 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.59 41.0 2.95e-01 73.3% 24.7%
3209046 109.4.1.559 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Tuberin 0.59 40.0 2.71e-01 73.3% 18.3%
3556145 10.1.1.35 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_3 0.59 43.0 3.13e-01 77.3% 36.7%
5028231 4312.1.1.0 a+b two layers › RelE-like › RelE-like › RelE-like 0.59 46.0 4.04e-01 84.0% 100.0%
3935896 331.4.1.0 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.58 49.0 4.15e-01 96.0% 60.8%
5004871 331.4.1.0 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.58 50.0 4.75e-01 98.7% 81.1%
3286199 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.58 48.0 4.02e-01 96.0% 87.1%
3690104 4026.1.1.0 a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) 0.57 43.0 3.37e-01 78.7% 70.7%
3702318 71.1.1.0 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.57 50.0 3.58e-01 100.0% 95.2%
3630050 331.3.1.9 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › AHSA1 0.56 47.0 3.87e-01 98.7% 72.3%
3795920 11.10.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.56 50.0 4.49e-01 96.0% 89.0%
3743052 5.1.4.78 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › TFIIIC_delta 0.56 47.0 2.97e-01 97.3% 89.3%
3271044 331.3.1.9 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › AHSA1 0.56 47.0 3.97e-01 98.7% 82.9%
3793430 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.56 43.0 4.02e-01 82.7% 85.3%
4969870 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.54 48.0 3.06e-01 97.3% 29.8%
3986751 3197.1.1.0 a+b two layers › N-terminal domain of effector protein PipB2 › N-terminal domain of effector protein PipB2 › N-terminal domain of effector protein PipB2 0.54 42.0 3.80e-01 88.0% 63.6%
5792 295.1.1.6 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › DUF1818 0.52 42.0 3.63e-01 94.7% 54.5%
5037595 2004.1.1.308 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_21 0.51 44.0 2.80e-01 96.0% 21.3%