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NC_015251.1__YP_004301037.1__ST65p200__00199

Bact-Vir

NC_015251.1__YP_004301037.1__ST65p200__00199

Identity

Accession:
NC_015251 ↗
Kingdom:
phage

Quality

69.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Ishigurovirus› Aeromonas_phage_65

TaxID: 2919549

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-62
PDB
Domain cluster: representative
CATH (59)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ukfA00 3.90.70.20 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.76 66.0 4.61e-01 100.0% 41.5%
1bnkA00 3.10.300.10 Alpha Beta › Roll › 3-methyladenine DNA Glycosylase; Chain A › Methylpurine-DNA glycosylase (MPG) 0.71 56.0 3.87e-01 89.3% 69.0%
3oe3C00 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.71 56.0 4.86e-01 87.5% 97.7%
2z0qA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.71 57.0 4.36e-01 89.3% 81.2%
2ej9A02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.70 56.0 5.96e-01 91.1% 100.0%
4f7uG00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.69 59.0 5.54e-01 94.6% 95.6%
2e12A00 2.30.30.720 Mainly Beta › Roll › SH3 type barrels. › Protein of unknown function (DUF3247) 0.68 61.0 5.15e-01 100.0% 78.5%
4m7dA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.68 61.0 5.85e-01 100.0% 98.5%
3ge2A00 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.68 56.0 4.87e-01 94.6% 95.5%
4x9cD00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.67 58.0 5.71e-01 100.0% 90.0%
4r3dA03 2.60.120.1680 Mainly Beta › Sandwich › Jelly Rolls › 0.67 58.0 4.34e-01 100.0% 39.4%
6asoH00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.67 58.0 5.05e-01 94.6% 72.3%
1b34B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.67 60.0 5.49e-01 100.0% 89.2%
4f7uF00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.67 60.0 5.49e-01 100.0% 93.2%
2ra2B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.67 54.0 5.34e-01 87.5% 87.9%
4c92G00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.66 59.0 5.37e-01 100.0% 92.0%
4m78N00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.66 59.0 5.48e-01 100.0% 90.1%
6v4xC01 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.66 59.0 4.86e-01 100.0% 68.0%
1d3bB00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.66 59.0 5.19e-01 100.0% 93.8%
5mkiH00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.66 58.0 5.39e-01 100.0% 93.0%
1m5q101 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.65 58.0 5.44e-01 100.0% 94.1%
3lgdA00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.65 39.0 2.25e-01 87.5% 6.8%
1h4rA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.65 50.0 4.34e-01 87.5% 81.3%
4c92B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.65 57.0 4.67e-01 100.0% 66.7%
3qijB03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.64 49.0 4.34e-01 87.5% 84.3%
4hdoA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.64 49.0 4.25e-01 87.5% 83.7%
4chmB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 51.0 4.04e-01 92.9% 77.4%
4gi3C00 3.30.60.30 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.63 42.0 4.19e-01 87.5% 66.7%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.63 56.0 4.93e-01 100.0% 77.1%
2k57A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.62 50.0 5.11e-01 89.3% 94.5%
4a53A01 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.62 53.0 5.12e-01 94.6% 88.7%
1wzoA01 2.30.30.370 Mainly Beta › Roll › SH3 type barrels. › FAH 0.61 41.0 4.48e-01 87.5% 100.0%
2fb7A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.61 48.0 4.30e-01 87.5% 86.3%
1fhoA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 47.0 3.76e-01 89.3% 66.4%
3bh1A03 3.40.140.40 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Domain of unknown function (DUF1846), C-terminal subdomain 0.60 47.0 3.54e-01 87.5% 71.9%
2greF02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.59 51.0 4.64e-01 100.0% 97.4%
2mvzA00 2.40.100.10 Mainly Beta › Beta Barrel › Cyclophilin › Cyclophilin-like 0.59 46.0 3.46e-01 87.5% 96.6%
6vtmB00 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.59 51.0 4.31e-01 100.0% 76.0%
4b6eB01 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.59 50.0 3.48e-01 100.0% 86.6%
1yloE02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.58 50.0 4.42e-01 100.0% 96.4%
3kl9A02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.57 50.0 4.59e-01 100.0% 98.6%
3by7E00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.57 42.0 3.86e-01 80.4% 85.5%
1i9gA01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.56 44.0 4.33e-01 92.9% 96.9%
3fqmA01 2.20.25.210 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › Hepatitis C NS5A, domain 1B 0.56 47.0 4.66e-01 98.2% 88.5%
1wdiA02 2.40.10.240 Mainly Beta › Beta Barrel › Thrombin, subunit H › QueA-like 0.56 44.0 4.06e-01 87.5% 100.0%
1a1rA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.55 44.0 3.92e-01 98.2% 60.0%
1mrzB02 2.40.30.30 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like 0.54 47.0 3.79e-01 100.0% 62.5%
2lp6A00 2.40.10.190 Mainly Beta › Beta Barrel › Thrombin, subunit H › translation elongation factor selb, chain A, domain 4 0.54 45.0 3.98e-01 100.0% 91.2%
2xe4A01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.54 37.0 2.27e-01 71.4% 36.9%
3mb5A01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.53 42.0 4.13e-01 92.9% 98.4%
1zunB03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.53 44.0 3.67e-01 98.2% 78.3%
1o54A01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.53 44.0 4.15e-01 100.0% 97.2%
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 42.0 4.10e-01 94.6% 81.8%
2budA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 42.0 3.70e-01 94.6% 68.5%
1t6lA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.52 40.0 2.57e-01 87.5% 18.5%
6j8yA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.52 41.0 2.65e-01 87.5% 19.1%
2l89A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.52 41.0 3.43e-01 92.9% 58.3%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.51 41.0 3.92e-01 100.0% 82.2%
2piaA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.51 44.0 3.65e-01 100.0% 85.6%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3663352 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.80 57.0 5.61e-01 76.8% 70.0%
5050786 4027.1.1.0 ↗ beta barrels › all-beta domain in DNA topoisomerase IV alpha subunit › all-beta domain in DNA topoisomerase IV alpha subunit › all-beta domain in DNA topoisomerase IV alpha subunit 0.76 52.0 5.64e-01 96.4% 88.9%
3987478 219.1.1.18 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 0.73 63.0 4.86e-01 100.0% 46.2%
1120986 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.71 61.0 5.75e-01 94.6% 94.0%
3936053 4.1.1.71 ↗ beta barrels › SH3 › SH3 › SH3 › Gemin7 0.71 60.0 5.56e-01 92.9% 85.7%
167340 4.1.1.28 ↗ beta barrels › SH3 › SH3 › SH3 › BPL_C 0.70 56.0 5.96e-01 91.1% 100.0%
3593222 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 61.0 5.41e-01 100.0% 96.3%
2444014 219.1.1.18 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 0.69 59.0 4.46e-01 100.0% 43.0%
4046385 219.1.1.18 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 0.69 59.0 4.47e-01 100.0% 45.7%
3972956 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.69 58.0 4.42e-01 100.0% 41.4%
3592995 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 58.0 5.05e-01 94.6% 92.9%
3392470 4027.1.1.0 ↗ beta barrels › all-beta domain in DNA topoisomerase IV alpha subunit › all-beta domain in DNA topoisomerase IV alpha subunit › all-beta domain in DNA topoisomerase IV alpha subunit 0.68 44.0 4.82e-01 87.5% 82.2%
3254881 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 59.0 5.38e-01 98.2% 98.7%
4058174 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.67 59.0 5.67e-01 100.0% 89.2%
4029154 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 59.0 4.65e-01 100.0% 62.2%
4293453 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 59.0 5.26e-01 100.0% 78.8%
4033484 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 58.0 5.64e-01 100.0% 96.9%
4656461 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.66 59.0 5.80e-01 100.0% 95.0%
4030011 4.1.1.89 ↗ beta barrels › SH3 › SH3 › SH3 › SM-ATX 0.66 60.0 5.07e-01 100.0% 85.6%
3197566 4.1.1.89 ↗ beta barrels › SH3 › SH3 › SH3 › SM-ATX 0.66 56.0 4.65e-01 94.6% 87.0%
2581118 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.66 59.0 4.66e-01 100.0% 59.6%
4034317 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 58.0 5.61e-01 100.0% 98.4%
3227009 4.1.1.71 ↗ beta barrels › SH3 › SH3 › SH3 › Gemin7 0.66 58.0 5.27e-01 98.2% 84.0%
4340758 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 59.0 5.45e-01 100.0% 100.0%
5074749 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 58.0 5.43e-01 100.0% 81.4%
3389662 4.1.1.219 ↗ beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.66 55.0 4.93e-01 94.6% 81.2%
3922676 4.1.1.89 ↗ beta barrels › SH3 › SH3 › SH3 › SM-ATX 0.66 58.0 4.81e-01 100.0% 88.0%
3837943 2485.1.1.0 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.65 51.0 3.83e-01 87.5% 66.9%
3925748 4.1.1.89 ↗ beta barrels › SH3 › SH3 › SH3 › SM-ATX 0.65 58.0 5.25e-01 100.0% 98.7%
4019995 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.65 58.0 4.64e-01 100.0% 82.7%
4884271 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.65 57.0 5.27e-01 100.0% 94.4%
5011460 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 57.0 5.33e-01 100.0% 92.9%
3758536 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 52.0 4.82e-01 89.3% 81.4%
3270749 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.64 57.0 5.03e-01 100.0% 90.0%
4073433 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.63 56.0 4.98e-01 100.0% 90.0%
4617429 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.63 49.0 4.95e-01 87.5% 94.5%
4031603 1.1.7.22 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Peptidase_M42 0.61 53.0 4.51e-01 100.0% 98.9%
3272021 9.15.1.1 ↗ beta barrels › Lipocalins/Streptavidin › TLDC domain of oxidation resistance protein 2 › TLDC domain of oxidation resistance protein 2 › TLD 0.61 50.0 3.70e-01 100.0% 75.4%
4120506 243.11.1.4 ↗ a+b two layers › Cystatin-like › NP_346341.1 protein › NP_346341.1 protein › PF29632 0.60 45.0 4.14e-01 85.7% 71.2%
3388412 2485.1.1.31 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Redoxin 0.60 48.0 3.53e-01 89.3% 63.9%
3314636 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.60 49.0 3.41e-01 94.6% 54.6%
4975808 1.1.7.22 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Peptidase_M42 0.59 51.0 4.42e-01 100.0% 100.0%
3723834 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 48.0 4.53e-01 92.9% 95.7%
4937158 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 50.0 4.93e-01 100.0% 88.3%
3470103 376.1.2.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_1 0.58 42.0 4.19e-01 78.6% 98.3%
3607227 4012.3.1.0 ↗ a+b two layers › SSHS domain › SSHS domain in CRISPR-associated endonuclease Cas9 › SSHS domain in CRISPR-associated endonuclease Cas9 0.58 47.0 5.03e-01 87.5% 98.0%
3769507 4.1.1.31 ↗ beta barrels › SH3 › SH3 › SH3 › Spin-Ssty 0.58 46.0 4.31e-01 89.3% 75.7%
4944162 1.1.7.22 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Peptidase_M42 0.57 48.0 4.20e-01 98.2% 100.0%
96 1.1.7.22 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Peptidase_M42 0.57 48.0 4.34e-01 98.2% 98.8%
3691144 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.57 47.0 4.44e-01 94.6% 95.7%
171891 4.1.1.110 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_FRX1 0.57 44.0 4.47e-01 89.3% 89.1%
5053432 1.1.7.22 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Peptidase_M42 0.56 48.0 4.14e-01 100.0% 96.8%
3282104 7579.1.1.6 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1 0.55 41.0 2.61e-01 80.4% 31.1%
3445792 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.55 42.0 2.58e-01 85.7% 86.3%
3936802 10.1.1.90 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › PF29322 0.54 44.0 3.42e-01 100.0% 76.7%
5047477 244.1.1.4 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › DAO 0.54 42.0 3.14e-01 89.3% 55.5%
4994907 247.1.1.0 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase 0.52 35.0 2.41e-01 71.4% 39.1%
1161323 1.1.5.14 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Peptidase_S29 0.51 44.0 3.14e-01 100.0% 51.9%
4268152 10.10.1.0 ↗ beta sandwiches › jelly-roll › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Lipase/lipooxygenase domain (PLAT/LH2 domain) 0.50 43.0 3.39e-01 96.4% 53.3%
D2 high residues 81-139
PDB