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NC_015251.1__YP_004301142.1__ST65p305__00304

Bact-Vir

NC_015251.1__YP_004301142.1__ST65p305__00304

Identity

Accession:
NC_015251 ↗
Kingdom:
phage

Quality

76.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Ishigurovirus› Aeromonas_phage_65

TaxID: 2919549

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 31-122
PDB
Domain cluster: representative
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7zvmA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.77 47.0 4.60e-01 97.8% 55.9%
6s0tA01 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.76 70.0 5.03e-01 100.0% 47.8%
1cauA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.75 51.0 4.06e-01 100.0% 35.9%
5u55A02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.74 47.0 4.31e-01 94.6% 49.2%
6b9tF02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.73 43.0 4.13e-01 93.5% 49.5%
3h8uA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.73 46.0 4.16e-01 97.8% 47.5%
5cadA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.73 50.0 3.89e-01 100.0% 33.7%
1zx5A02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.72 41.0 4.37e-01 96.7% 62.7%
5fq0A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.72 44.0 4.14e-01 97.8% 50.9%
2oa2A01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.71 48.0 4.43e-01 98.9% 52.9%
4lejA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.71 50.0 4.10e-01 98.9% 40.2%
6l9iA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.71 46.0 3.71e-01 97.8% 33.9%
4lejA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.71 49.0 3.95e-01 100.0% 37.1%
2vpvA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.71 43.0 4.35e-01 96.7% 59.6%
5cu1A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.71 44.0 3.46e-01 98.9% 29.4%
3d0jA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.70 46.0 4.05e-01 97.8% 44.9%
5by5A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.70 43.0 4.04e-01 97.8% 49.6%
5fljA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.70 46.0 3.72e-01 98.9% 34.6%
5cadA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.69 50.0 3.99e-01 98.9% 37.6%
1ds1A00 3.60.130.10 Alpha Beta › 4-Layer Sandwich › Double-stranded beta-helix › Clavaminate synthase-like 0.69 62.0 4.22e-01 100.0% 50.5%
1j3qB00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.68 45.0 3.61e-01 97.8% 33.9%
3bb6C00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.66 44.0 4.21e-01 95.7% 56.2%
1xsqA00 2.60.120.480 Mainly Beta › Sandwich › Jelly Rolls › Ureidoglycolate hydrolase 0.65 44.0 3.76e-01 95.7% 42.5%
1vrbD01 2.60.120.650 Mainly Beta › Sandwich › Jelly Rolls › Cupin 0.61 54.0 4.05e-01 96.7% 42.3%
3hrzC01 2.20.210.20 Mainly Beta › Single Sheet › ubp-family deubiquitinating enzyme fold › 0.61 32.0 4.21e-01 95.7% 95.9%
3cu7A10 2.60.120.1540 Mainly Beta › Sandwich › Jelly Rolls › 0.61 45.0 4.22e-01 100.0% 62.6%
2b39A10 2.60.120.1540 Mainly Beta › Sandwich › Jelly Rolls › 0.59 43.0 4.03e-01 100.0% 61.2%
2y0oA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.59 45.0 3.74e-01 97.8% 45.0%
3kq4B02 2.60.120.290 Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain 0.58 44.0 4.06e-01 95.7% 63.6%
3ww3A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.57 51.0 3.76e-01 100.0% 42.9%
2zoeB02 2.60.120.1080 Mainly Beta › Sandwich › Jelly Rolls › 0.55 45.0 3.93e-01 94.6% 55.9%
4hslA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 47.0 3.85e-01 97.8% 51.2%
3winE03 2.60.120.1090 Mainly Beta › Sandwich › Jelly Rolls › 0.55 41.0 3.92e-01 94.6% 67.3%
4dzgA00 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.54 40.0 3.79e-01 93.5% 65.5%
2ws9300 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.53 45.0 3.46e-01 94.6% 46.9%
4qpiC00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.52 44.0 3.37e-01 98.9% 52.0%
4jonC00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.52 36.0 3.28e-01 100.0% 55.1%
2ws9201 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.51 42.0 3.44e-01 95.7% 55.4%
1mec100 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.51 45.0 3.27e-01 100.0% 45.6%
1tme300 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.51 43.0 3.36e-01 100.0% 51.3%
1b35C00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.51 43.0 3.18e-01 100.0% 70.9%
3mfiA04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.51 35.0 3.28e-01 71.7% 89.1%
1opoC01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.50 42.0 3.60e-01 96.7% 61.8%
5aooC00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.50 44.0 3.41e-01 100.0% 54.5%
3lqcA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.50 36.0 3.13e-01 77.2% 94.7%
ECOD (46)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4662228 10.12.1.39 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.75 48.0 4.28e-01 94.6% 46.2%
134743 10.12.1.39 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.74 46.0 4.31e-01 98.9% 50.9%
4577896 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.73 49.0 4.70e-01 100.0% 59.3%
3689720 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.72 54.0 4.23e-01 95.7% 37.9%
3719020 10.12.1.25 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › PhyH 0.72 66.0 5.35e-01 100.0% 80.0%
3280246 10.12.1.39 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.72 47.0 4.56e-01 98.9% 60.0%
4681454 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.71 44.0 3.53e-01 95.7% 32.2%
3655985 10.12.1.3 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_1 0.70 47.0 4.26e-01 97.8% 50.4%
4020832 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.70 47.0 4.21e-01 98.9% 50.4%
3191338 10.12.1.39 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.69 47.0 4.35e-01 100.0% 55.7%
3205583 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.68 48.0 4.51e-01 97.8% 59.1%
3213521 10.12.1.25 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › PhyH 0.67 57.0 5.40e-01 94.6% 87.3%
3505756 10.12.1.38 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › PCO_ADO 0.65 52.0 3.87e-01 97.8% 34.3%
3935925 10.12.1.101 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › JmjC, Cupin_8 0.64 56.0 3.72e-01 100.0% 34.9%
3801498 10.12.1.101 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › JmjC, Cupin_8 0.63 55.0 4.19e-01 96.7% 40.9%
3586388 10.12.1.101 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › JmjC, Cupin_8 0.63 56.0 3.66e-01 100.0% 33.1%
3688937 10.12.1.29 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › CDO_I 0.63 54.0 4.09e-01 98.9% 40.5%
3497743 10.12.1.5 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › PMI_typeI_C 0.63 55.0 4.61e-01 96.7% 56.8%
3227731 10.12.1.101 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › JmjC, Cupin_8 0.63 56.0 3.75e-01 100.0% 37.5%
3236909 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.63 45.0 4.18e-01 94.6% 60.0%
3975843 10.12.1.18 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › DUF386 0.63 51.0 4.37e-01 95.7% 54.7%
3650101 10.12.1.3 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_1 0.61 47.0 2.93e-01 98.9% 15.0%
3400146 10.12.1.38 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › PCO_ADO 0.61 51.0 3.80e-01 97.8% 35.4%
None — 0.61 51.0 3.78e-01 98.9% 35.9%
3203105 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.60 43.0 4.46e-01 97.8% 80.0%
3933729 10.12.1.52 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_8 0.60 50.0 3.70e-01 100.0% 34.0%
3184485 76.1.1.0 ↗ beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I 0.60 34.0 3.23e-01 95.7% 48.1%
1883210 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.57 51.0 3.78e-01 100.0% 42.9%
3433271 10.12.1.3 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_1 0.57 50.0 3.74e-01 97.8% 47.4%
4649270 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.56 40.0 4.54e-01 98.9% 98.6%
3992449 10.32.1.213 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PF25883 0.56 48.0 4.22e-01 98.9% 77.9%
3295404 10.12.1.38 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › PCO_ADO 0.56 47.0 3.52e-01 97.8% 35.9%
4454790 10.12.1.3 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_1 0.55 48.0 3.57e-01 98.9% 39.1%
3230186 10.4.1.19 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › Glycoprotein 0.55 42.0 3.91e-01 93.5% 65.2%
3926732 10.32.1.213 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PF25883 0.55 47.0 4.11e-01 100.0% 69.3%
3168883 10.32.1.205 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Ams1-like_1st 0.54 45.0 3.85e-01 94.6% 88.7%
3447537 10.12.1.3 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_1 0.54 48.0 3.71e-01 98.9% 44.4%
3492104 10.32.1.41 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › GOLD_2 0.54 47.0 4.13e-01 96.7% 66.7%
3207684 10.12.1.51 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy_2 0.54 48.0 3.54e-01 100.0% 46.3%
3376784 10.32.1.231 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › APD1-4_M 0.53 42.0 3.86e-01 95.7% 66.7%
3519566 10.32.1.230 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › NDNF_N 0.52 43.0 3.87e-01 94.6% 73.3%
2879296 10.32.1.78 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PirA-like 0.52 38.0 3.79e-01 92.4% 74.0%
3708356 3156.1.1.0 ↗ beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related 0.52 37.0 3.87e-01 93.5% 83.5%
4887541 10.32.1.18 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Endotoxin_C 0.52 37.0 3.31e-01 76.1% 66.4%
2441244 10.2.1.7 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Viral_coat 0.50 41.0 3.22e-01 93.5% 73.2%
4017724 10.12.1.51 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy_2 0.50 40.0 2.87e-01 89.1% 72.7%