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NC_015251.1__YP_004301248.1__ST65p411__00410
Bact-VirNC_015251.1__YP_004301248.1__ST65p411__00410
Identity
- Accession:
- NC_015251 ↗
- Kingdom:
- phage
Quality
74.5
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Straboviridae›
Ishigurovirus›
Aeromonas_phage_65
TaxID: 2919549
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-87
Domain cluster:
representative
CATH (29)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6n2nA01 | 3.40.920.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III | 0.72 | 48.0 | 3.80e-01 | 74.7% | 33.1% |
| 4d7rA01 | 1.10.220.20 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › | 0.67 | 51.0 | 5.31e-01 | 90.8% | 86.6% |
| 3h4cA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.64 | 39.0 | 3.84e-01 | 72.4% | 55.2% |
| 2a3vB01 | 1.10.150.130 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain | 0.64 | 51.0 | 5.06e-01 | 95.4% | 81.9% |
| 3s64A00 | 1.10.225.10 | Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like | 0.63 | 43.0 | 4.46e-01 | 71.3% | 85.2% |
| 2i2xB01 | 1.10.1240.10 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain | 0.62 | 51.0 | 4.96e-01 | 94.3% | 86.0% |
| 6z01B01 | 1.10.10.41 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Yeast DNA topoisomerase - domain 1 | 0.61 | 42.0 | 4.45e-01 | 72.4% | 94.9% |
| 2kjgA00 | 1.20.120.970 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.61 | 41.0 | 4.03e-01 | 71.3% | 78.8% |
| 3llkA02 | 1.20.120.310 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › ERV/ALR sulfhydryl oxidase domain | 0.60 | 41.0 | 3.52e-01 | 71.3% | 92.3% |
| 3l9tA01 | 1.10.1240.70 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › | 0.58 | 42.0 | 4.34e-01 | 90.8% | 81.9% |
| 3g3oA00 | 3.20.100.30 | Alpha Beta › Alpha-Beta Barrel › mRNA Triphosphatase Cet1; Chain A › VTC, catalytic tunnel domain | 0.58 | 40.0 | 2.79e-01 | 71.3% | 23.8% |
| 2r5sA02 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.57 | 43.0 | 4.36e-01 | 88.5% | 80.7% |
| 3mnlB00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.57 | 46.0 | 3.72e-01 | 92.0% | 64.3% |
| 2l6hA00 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.55 | 41.0 | 3.44e-01 | 79.3% | 60.4% |
| 1e7pC00 | 1.20.1300.10 | Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit | 0.55 | 44.0 | 3.27e-01 | 90.8% | 87.0% |
| 4ezbA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.54 | 41.0 | 3.80e-01 | 82.8% | 90.6% |
| 4g1tA02 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.54 | 33.0 | 3.83e-01 | 80.5% | 86.9% |
| 1pn9B02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.54 | 45.0 | 3.95e-01 | 92.0% | 79.2% |
| 3qavA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.54 | 45.0 | 3.88e-01 | 93.1% | 77.9% |
| 1bgfA00 | 1.10.532.10 | Mainly Alpha › Orthogonal Bundle › Transcription Factor, Stat-4 › STAT transcription factor, N-terminal domain | 0.53 | 37.0 | 3.34e-01 | 72.4% | 57.3% |
| 4l7aA00 | 3.40.390.70 | Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › | 0.53 | 41.0 | 2.99e-01 | 83.9% | 36.4% |
| 5jpoD02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.53 | 43.0 | 3.80e-01 | 93.1% | 59.4% |
| 3qldA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.53 | 37.0 | 3.15e-01 | 74.7% | 60.5% |
| 5jpnB01 | 1.20.91.20 | Mainly Alpha › Up-down Bundle › Influenza Virus Matrix Protein; Chain A, domain 1 › Anaphylotoxins (complement system) | 0.52 | 36.0 | 3.85e-01 | 71.3% | 98.6% |
| 4c0aA01 | 1.10.220.20 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › | 0.52 | 40.0 | 4.22e-01 | 85.1% | 88.9% |
| 3cbuA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.51 | 40.0 | 3.47e-01 | 83.9% | 79.9% |
| 4it4A02 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.51 | 38.0 | 3.81e-01 | 79.3% | 79.1% |
| 4iluA02 | 1.20.58.1290 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › CarD-like, C-terminal domain | 0.51 | 39.0 | 3.65e-01 | 83.9% | 66.7% |
| 8d7hD01 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.51 | 41.0 | 3.37e-01 | 92.0% | 76.9% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4125915 | 186.1.1.1 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 | 0.67 | 55.0 | 5.29e-01 | 96.6% | 78.0% |
| 5044572 | 310.2.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF | 0.66 | 45.0 | 4.27e-01 | 70.1% | 93.3% |
| 3629288 | 101.1.10.34 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N+CycT2-like_C | 0.66 | 45.0 | 3.42e-01 | 71.3% | 34.0% |
| 3672635 | 101.1.1.295 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_70 | 0.65 | 44.0 | 4.67e-01 | 70.1% | 81.3% |
| 4002034 | 633.1.1.1 ↗ | alpha bundles › Bromodomain-like › Bromodomain › Bromodomain › Bromodomain | 0.64 | 45.0 | 4.43e-01 | 73.6% | 69.5% |
| 3276274 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.63 | 43.0 | 4.13e-01 | 71.3% | 62.9% |
| 299159 | 186.1.1.4 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_4 | 0.63 | 52.0 | 4.92e-01 | 96.6% | 76.7% |
| 3263419 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.62 | 54.0 | 3.64e-01 | 100.0% | 32.8% |
| 3808802 | 101.1.2.10 ↗ | alpha arrays › HTH › HTH › winged helix domain › Linker_histone | 0.61 | 43.0 | 4.53e-01 | 77.0% | 85.3% |
| 3447336 | 109.4.1.1207 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_TmcB | 0.61 | 36.0 | 3.23e-01 | 79.3% | 41.7% |
| 3426824 | 3352.1.1.4 ↗ | alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › Alg6_Alg8 | 0.60 | 49.0 | 3.17e-01 | 93.1% | 90.0% |
| 4998613 | 186.1.1.0 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N | 0.60 | 51.0 | 4.95e-01 | 96.6% | 87.0% |
| 3495456 | 109.4.1.103 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › GLE1 | 0.60 | 51.0 | 3.62e-01 | 96.6% | 51.3% |
| 3668207 | 109.4.1.1258 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2 | 0.58 | 42.0 | 3.34e-01 | 89.7% | 35.8% |
| 3166640 | 109.4.1.1360 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CBF, NOC3p | 0.58 | 48.0 | 3.07e-01 | 95.4% | 41.0% |
| 3232086 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.57 | 39.0 | 3.88e-01 | 72.4% | 81.1% |
| 4390290 | 101.1.1.13 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_1 | 0.56 | 37.0 | 4.06e-01 | 73.6% | 90.8% |
| 3937118 | 109.24.1.2 ↗ | alpha superhelices › Repetitive alpha hairpins › Helical domain in dedicator of cytokinesis protein 9 › Helical domain in dedicator of cytokinesis protein 9 › DHR-2_Lobe_C | 0.55 | 44.0 | 3.86e-01 | 90.8% | 82.9% |
| 4947165 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.55 | 38.0 | 3.18e-01 | 85.1% | 37.6% |
| 3531310 | 109.4.1.574 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › NOC3p | 0.55 | 46.0 | 3.42e-01 | 95.4% | 70.2% |
| 4245358 | 109.1.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C › GST_C | 0.52 | 42.0 | 3.74e-01 | 90.8% | 61.5% |
| 3655933 | 604.12.1.2 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › Vta1 | 0.51 | 41.0 | 3.95e-01 | 87.4% | 82.0% |