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NC_015253.1__YP_004301422.1__BrPhBA9_gp089__00089
Bact-VirNC_015253.1__YP_004301422.1__BrPhBA9_gp089__00089
Identity
- Accession:
- NC_015253 ↗
- Kingdom:
- phage
Quality
68.2
mean pLDDT
Taxonomy
TaxID: 857312
Cluster
View cluster (8 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-65
Domain cluster:
rep: NC_012530.1__YP_002790789.1__lb338_phage_110__00110__D7-53
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF24040.2 best | DUF7349 | 64.8 | 6.30e-18 | 70.8% | 90.0% |
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2hjqA01 | 3.40.5.20 | Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › YqbF domain | 0.66 | 44.0 | 4.89e-01 | 81.5% | 100.0% |
| 3vn5A01 | 3.30.310.10 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein | 0.62 | 43.0 | 4.30e-01 | 73.8% | 100.0% |
| 4tvcA01 | 2.10.270.10 | Mainly Beta › Ribbon › left handed beta-beta-3-solenoid › Cholin Binding | 0.61 | 42.0 | 3.00e-01 | 70.8% | 55.9% |
| 3tfiA00 | 3.30.1360.120 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 | 0.61 | 51.0 | 3.25e-01 | 96.9% | 61.0% |
| 3v76A02 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.59 | 47.0 | 4.34e-01 | 90.8% | 93.3% |
| 1qupA01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 42.0 | 4.16e-01 | 78.5% | 90.0% |
| 4ihqA01 | 3.30.450.370 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.58 | 40.0 | 3.09e-01 | 72.3% | 48.4% |
| 3m6uA01 | 3.30.70.1170 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sun protein; domain 3 | 0.58 | 45.0 | 4.16e-01 | 87.7% | 72.1% |
| 1ng4A02 | 3.30.9.10 | Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › D-Amino Acid Oxidase, subunit A, domain 2 | 0.57 | 41.0 | 3.34e-01 | 80.0% | 50.0% |
| 3tj8A02 | 3.30.70.790 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain | 0.56 | 42.0 | 4.08e-01 | 84.6% | 82.4% |
| 3lpxB02 | 3.30.1360.40 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.56 | 39.0 | 3.55e-01 | 75.4% | 81.9% |
| 2lsmA00 | 3.40.5.70 | Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › DNA packaging chaperone protein FI, C-terminal beta-strand domain | 0.55 | 41.0 | 4.27e-01 | 92.3% | 86.9% |
| 2e9xB01 | 3.40.5.50 | Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › | 0.54 | 43.0 | 4.28e-01 | 100.0% | 87.9% |
| 1bliA03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.51 | 38.0 | 3.52e-01 | 81.5% | 87.4% |
| 2v8pA02 | 3.30.70.890 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain | 0.51 | 40.0 | 3.45e-01 | 92.3% | 93.9% |
| 2d0bA01 | 3.30.310.10 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein | 0.51 | 43.0 | 3.93e-01 | 98.5% | 78.7% |
ECOD (23)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5028450 | 331.1.1.6 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › DUF3378 | 0.64 | 43.0 | 4.26e-01 | 70.8% | 97.1% |
| 4932084 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.63 | 45.0 | 4.94e-01 | 95.4% | 100.0% |
| 2879522 | 244.1.1.0 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C | 0.61 | 45.0 | 4.08e-01 | 80.0% | 80.4% |
| 4027491 | 292.2.1.0 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain | 0.61 | 41.0 | 3.51e-01 | 70.8% | 98.2% |
| 4946925 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.60 | 42.0 | 4.06e-01 | 73.8% | 80.0% |
| 4975580 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.60 | 44.0 | 4.52e-01 | 96.9% | 86.7% |
| 3730580 | 4076.3.1.8 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › PSF2_N | 0.59 | 43.0 | 4.32e-01 | 96.9% | 80.0% |
| 4600120 | 898.1.1.1 ↗ | a+b two layers › a+b domain in Ribosomal protein L1 › a+b domain in Ribosomal protein L1 › a+b domain in Ribosomal protein L1 › Ribosomal_L1 | 0.58 | 49.0 | 4.09e-01 | 100.0% | 84.8% |
| 3586913 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.58 | 46.0 | 4.01e-01 | 90.8% | 97.1% |
| 4521206 | 331.1.1.6 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › DUF3378 | 0.58 | 41.0 | 4.08e-01 | 76.9% | 97.1% |
| 4979633 | 4076.3.1.8 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › PSF2_N | 0.57 | 44.0 | 4.47e-01 | 96.9% | 86.2% |
| 4021638 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.57 | 44.0 | 4.48e-01 | 98.5% | 87.7% |
| 5010436 | 304.1.1.1 ↗ | a+b two layers › Alpha-beta plaits › GHMP Kinase, C-terminal domain › GHMP Kinase, C-terminal domain › GHMP_kinases_C | 0.57 | 44.0 | 3.64e-01 | 89.2% | 96.2% |
| 3060783 | 4076.3.1.8 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › PSF2_N | 0.55 | 41.0 | 4.19e-01 | 96.9% | 85.5% |
| 3289942 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.55 | 40.0 | 3.73e-01 | 80.0% | 98.8% |
| 4864430 | 3740.1.1.1 ↗ | alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_N,FrhB_FdhB_C | 0.54 | 44.0 | 2.99e-01 | 93.8% | 87.5% |
| 4509443 | 4076.3.1.8 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › PSF2_N | 0.54 | 40.0 | 4.06e-01 | 95.4% | 84.6% |
| 4201840 | 331.1.1.6 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › DUF3378 | 0.54 | 43.0 | 4.13e-01 | 93.8% | 87.5% |
| 4933530 | 304.24.1.5 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › Trm5_N | 0.53 | 39.0 | 3.84e-01 | 84.6% | 86.7% |
| 4077309 | 331.1.1.6 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › DUF3378 | 0.51 | 41.0 | 3.93e-01 | 93.8% | 88.7% |
| 3477856 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.51 | 36.0 | 2.96e-01 | 90.8% | 39.2% |
| 3242948 | 267.1.1.3 ↗ | a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase | 0.51 | 41.0 | 2.97e-01 | 96.9% | 93.8% |
| 4972029 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.50 | 43.0 | 3.24e-01 | 98.5% | 74.7% |