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NC_015253.1__YP_004301427.1__BrPhBA9_gp094__00094

Bact-Vir

Identity

Accession:: NC_015253 ↗
Kingdom:: phage

Quality

75.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Klumppvirus› Brochothrix_phage_A9

TaxID: 857312

Cluster

View cluster (7 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 21-69

PDB

Domain cluster: representative

CATH (25)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2qvwA04	1.10.1520.10	Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain	0.71	58.0	4.23e-01	95.9%	63.4%
3a06B03	1.10.1740.10	Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif	0.67	55.0	4.73e-01	100.0%	71.6%
5l3wA01	1.20.120.140	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain	0.67	55.0	4.76e-01	98.0%	63.1%
2ekfA01	1.10.8.10	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain	0.63	45.0	4.64e-01	100.0%	87.0%
1f8uA00	3.40.50.1820	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain	0.63	50.0	2.92e-01	100.0%	33.3%
2di0A01	1.10.8.10	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain	0.61	43.0	4.44e-01	98.0%	84.8%
7r97A01	1.10.1520.10	Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain	0.61	49.0	3.66e-01	100.0%	69.6%
3e21A00	1.10.8.10	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain	0.60	42.0	4.37e-01	100.0%	100.0%
3rv0C02	1.10.1520.10	Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain	0.59	41.0	3.09e-01	77.6%	59.0%
1qo0D02	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.58	40.0	4.11e-01	77.6%	93.5%
1vluA01	3.40.605.10	Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1	0.57	42.0	2.78e-01	83.7%	62.9%
3cnhB02	1.10.150.240	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2	0.57	45.0	4.19e-01	100.0%	69.1%
7oufB01	3.30.420.10	Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H	0.56	38.0	2.79e-01	71.4%	24.2%
3ajfA00	1.20.1440.190	Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Tenuivirus movement protein	0.55	45.0	3.78e-01	95.9%	80.4%
1t11A02	1.10.3120.10	Mainly Alpha › Orthogonal Bundle › Trigger factor, domain 2 › Trigger factor, C-terminal domain	0.55	45.0	3.21e-01	98.0%	65.7%
2xzmV01	1.10.60.20	Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › Ribosomal protein S17	0.55	38.0	3.62e-01	81.6%	60.7%
4heoA00	1.10.8.10	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain	0.54	42.0	4.19e-01	100.0%	87.3%
2p5vA01	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.54	36.0	3.64e-01	73.5%	76.9%
3k6hA01	3.40.109.10	Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase	0.53	41.0	2.95e-01	89.8%	50.9%
1a3qA01	2.60.40.340	Mainly Beta › Sandwich › Immunoglobulin-like › Rel homology domain (RHD), DNA-binding domain	0.52	35.0	2.48e-01	73.5%	19.6%
3mhsB00	1.10.246.140	Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › ENY2/SUS1	0.52	37.0	3.14e-01	77.6%	83.5%
3dfzA02	1.10.8.610	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › SirC, precorrin-2 dehydrogenase, C-terminal helical domain-like	0.52	43.0	3.86e-01	100.0%	70.3%
1fcqA00	3.20.20.70	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I	0.51	34.0	2.18e-01	73.5%	27.7%
3ufeA02	1.20.58.1950	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.50	38.0	3.81e-01	89.8%	81.1%
3zhiA00	1.10.260.40	Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains	0.50	41.0	3.72e-01	98.0%	76.7%

ECOD (18)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3699904	108.1.1.29 ↗	alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_7	0.74	62.0	5.21e-01	100.0%	54.4%
4172563	108.1.1.97 ↗	alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_7	0.73	60.0	5.73e-01	98.0%	83.3%
3629936	108.1.1.0 ↗	alpha arrays › EF-hand › EF-hand-related › EF-hand	0.73	60.0	5.21e-01	100.0%	64.7%
4203362	181.1.1.15 ↗	alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › PF29197	0.72	61.0	5.97e-01	100.0%	92.7%
3677398	3567.1.1.93 ↗	a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer › Tcp11	0.71	60.0	3.80e-01	100.0%	22.3%
3993593	103.1.1.0 ↗	alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain	0.70	58.0	5.39e-01	98.0%	72.3%
4144086	166.1.1.1 ↗	alpha superhelices › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › DXPR_C	0.67	56.0	4.59e-01	100.0%	64.0%
4428553	103.1.1.6 ↗	alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C	0.67	56.0	5.27e-01	100.0%	78.1%
4626961	7579.1.1.89 ↗	a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › COesterase, BD-FAE	0.64	51.0	3.16e-01	100.0%	14.9%
982750	7579.1.1.89 ↗	a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › COesterase, BD-FAE	0.63	50.0	2.95e-01	100.0%	34.1%
3898428	7579.1.1.1 ↗	a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › COesterase	0.61	49.0	2.88e-01	100.0%	10.2%
3769015	130.1.1.2 ↗	alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › LEM	0.59	39.0	3.95e-01	93.9%	68.0%
4010451	3788.1.1.15 ↗	alpha bundles › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › PF27202	0.57	46.0	4.07e-01	93.9%	76.0%
3398172	190.1.1.1 ↗	alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box	0.57	38.0	3.13e-01	71.4%	34.3%
4676854	179.1.1.1 ↗	alpha bundles › CO dehydrogenase ISP C-domain like › CO dehydrogenase ISP C-domain like › CO dehydrogenase ISP C-domain like › Fer2_2	0.55	46.0	3.55e-01	95.9%	40.9%
5075868	101.1.17.0 ↗	alpha arrays › HTH › HTH › FF domain	0.53	37.0	3.38e-01	75.5%	55.7%
5078343	632.3.1.0 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › Phosphoprotein XD domain › Phosphoprotein XD domain	0.52	40.0	3.82e-01	100.0%	73.4%
3547922	3860.1.1.143 ↗	alpha bundles › Myosin VI lever arm › Myosin VI lever arm › Myosin VI lever arm › PF29854	0.50	39.0	3.15e-01	98.0%	87.5%