←Back to structures

NC_015262.1__YP_004306113.1__phiCD6356_12__00012

Bact-Vir

NC_015262.1__YP_004306113.1__phiCD6356_12__00012

Identity

Accession:
NC_015262 ↗
Kingdom:
phage

Quality

84.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Clostridium_phage_phiCD6356

TaxID: 864178

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-89
PDB
Domain cluster: rep: OP918669.1__WBL53562.1__X__00012__D7-96
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF23857.2 best Phage_TAC_19 53.4 3.60e-14 100.0% 81.7%
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ne5B04 6.10.140.730 Special › Helix non-globular › Helix Hairpins › 0.70 41.0 5.16e-01 79.3% 100.0%
3b0pA02 1.20.120.1460 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.59 41.0 4.38e-01 80.5% 82.7%
4ehoB03 3.30.450.270 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PHY domain 0.59 43.0 3.44e-01 77.0% 91.1%
2a6cA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.59 35.0 3.75e-01 83.9% 67.1%
3ot2A00 3.90.1570.10 Alpha Beta › Alpha-Beta Complex › tt1808, chain A › tt1808, chain A 0.58 44.0 3.48e-01 80.5% 60.3%
1gs0A01 1.20.142.10 Mainly Alpha › Up-down Bundle › Poly(ADP-ribose) Polymerase; domain 1 › Poly(ADP-ribose) polymerase, regulatory domain 0.58 46.0 4.05e-01 87.4% 57.4%
2r0qC02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.58 35.0 4.28e-01 86.2% 96.4%
2vlaA01 1.10.10.2080 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.58 39.0 4.11e-01 86.2% 79.5%
1binA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.57 43.0 3.74e-01 82.8% 95.8%
4adnA01 1.20.1280.250 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.57 45.0 4.60e-01 85.1% 85.9%
4ottA02 1.10.246.130 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Gamma-glutamyltranspeptidase, large (L) subunit, C-terminal domain 0.57 37.0 3.32e-01 80.5% 47.1%
1aueB00 1.20.120.150 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › FKBP12-rapamycin binding domain 0.57 42.0 4.19e-01 81.6% 95.7%
1go3F02 6.10.140.10 Special › Helix non-globular › Helix Hairpins › 0.56 27.0 3.31e-01 74.7% 76.6%
3dewA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.55 47.0 4.12e-01 97.7% 68.6%
3fnbA01 1.20.1440.110 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › acylaminoacyl peptidase 0.54 37.0 3.40e-01 71.3% 59.6%
1yisA01 1.10.275.10 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) 0.53 37.0 3.52e-01 73.6% 67.0%
2w43A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.52 33.0 3.90e-01 79.3% 96.5%
3gbhB00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.52 40.0 3.04e-01 81.6% 77.9%
2yqyA00 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.51 38.0 3.39e-01 78.2% 67.5%
6hftA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.51 36.0 3.24e-01 75.9% 57.5%
1ywqA00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.50 38.0 3.00e-01 82.8% 79.4%
8cdaC01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.50 37.0 3.35e-01 77.0% 70.9%
1tgoA05 1.10.132.60 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › B family DNA polymerase, thumb domain 0.50 38.0 3.21e-01 85.1% 80.2%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3944499 6050.1.1.0 ↗ a+b two layers › Phage tail assembly chaperone › Phage tail assembly chaperone › Phage tail assembly chaperone 0.81 68.0 6.89e-01 98.9% 91.8%
3238415 109.27.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › BACK domain › BACK domain 0.71 38.0 4.18e-01 78.2% 64.3%
3764996 11.2.1.77 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › FerA 0.67 52.0 4.63e-01 81.6% 84.2%
3528706 192.29.1.11 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › FerA 0.67 51.0 4.52e-01 81.6% 80.8%
3492595 192.29.1.11 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › FerA 0.65 50.0 4.44e-01 81.6% 81.6%
3439198 192.17.1.0 ↗ alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like 0.65 32.0 3.59e-01 75.9% 58.5%
3930793 196.1.1.1 ↗ alpha bundles › Regulator of G-protein signaling, RGS › Regulator of G-protein signaling, RGS › Regulator of G-protein signaling, RGS › RGS 0.65 51.0 4.24e-01 82.8% 55.9%
3275943 196.1.1.1 ↗ alpha bundles › Regulator of G-protein signaling, RGS › Regulator of G-protein signaling, RGS › Regulator of G-protein signaling, RGS › RGS 0.65 51.0 4.28e-01 82.8% 58.6%
3753345 609.1.1.0 ↗ alpha bundles › Domain of poly(ADP-ribose) polymerase › Domain of poly(ADP-ribose) polymerase › Domain of poly(ADP-ribose) polymerase 0.64 47.0 4.25e-01 87.4% 56.7%
4950678 3843.1.1.0 ↗ alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K 0.59 41.0 4.10e-01 72.4% 94.4%
3589591 601.32.1.1 ↗ alpha bundles › Four-helical up-and-down bundle › FusB family N-terminal domain › FusB family N-terminal domain › EF-G-binding_N 0.57 44.0 4.62e-01 82.8% 91.3%
4990095 604.6.1.0 ↗ alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain 0.56 41.0 4.14e-01 83.9% 77.6%
3701020 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.55 42.0 4.39e-01 79.3% 86.3%
3185107 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.55 35.0 3.80e-01 82.8% 81.4%
3709934 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.54 46.0 3.01e-01 95.4% 48.8%
4933603 101.8.1.0 ↗ alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases 0.54 45.0 3.92e-01 95.4% 91.0%
3280061 2008.1.1.20 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Uma2 0.54 38.0 3.07e-01 73.6% 62.4%
3736648 109.4.1.356 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans 0.54 37.0 2.39e-01 72.4% 48.6%
4940116 140.1.1.14 ↗ alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › tRNA-synt_1e 0.54 41.0 3.53e-01 93.1% 50.3%
4947322 192.15.1.1 ↗ alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › VPS28 0.52 40.0 3.61e-01 79.3% 67.0%
5004570 604.3.1.0 ↗ alpha bundles › Spectrin repeat-like › BAG domain › BAG domain 0.52 39.0 4.14e-01 78.2% 90.7%
4609559 604.2.1.1 ↗ alpha bundles › Spectrin repeat-like › Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain › Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain › Succ_DH_flav_C 0.52 39.0 3.46e-01 81.6% 55.4%
5048617 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.52 35.0 3.65e-01 82.8% 76.2%
4629067 633.24.1.5 ↗ alpha bundles › Bromodomain-like › RABEX-5 helical domain › RABEX-5 helical domain › PF29080 0.51 41.0 4.17e-01 89.7% 94.1%
4989312 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.50 38.0 2.84e-01 82.8% 41.2%