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NC_015262.1__YP_004306138.1__phiCD6356_37__00037

Bact-Vir

NC_015262.1__YP_004306138.1__phiCD6356_37__00037

Identity

Accession:
NC_015262 ↗
Kingdom:
phage

Quality

89.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Clostridium_phage_phiCD6356

TaxID: 864178

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-97
PDB
Domain cluster: representative
Pfam (3)
AccessionNameScoreE-valueQ covHMM cov
PF13413.13 best HTH_25 26.1 8.50e-06 59.6% 66.1%
PF13443.13 HTH_26 26.6 7.80e-06 57.5% 74.6%
PF01381.29 HTH_3 48.4 1.10e-12 56.4% 90.9%
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3g7dA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.85 49.0 5.17e-01 72.3% 64.0%
3fymA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.82 57.0 6.05e-01 71.3% 86.6%
7zviA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.81 56.0 5.08e-01 71.3% 70.5%
2ictA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.81 58.0 6.23e-01 78.7% 87.7%
3kxaA02 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.80 53.0 6.23e-01 72.3% 97.0%
2ebyA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.79 58.0 6.22e-01 78.7% 91.1%
3cecA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.78 57.0 5.84e-01 78.7% 79.1%
3pxpA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.75 59.0 5.98e-01 83.0% 82.8%
1x57A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.75 53.0 5.41e-01 72.3% 82.4%
1dw9A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.74 51.0 5.34e-01 73.4% 78.2%
6f8hC00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.73 60.0 6.06e-01 92.6% 90.3%
2go7A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.68 38.0 4.54e-01 79.8% 79.1%
1y9qA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.68 51.0 5.40e-01 80.9% 87.1%
3vfzB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 35.0 4.22e-01 79.8% 79.4%
3g2bA00 1.10.10.1150 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Coenzyme PQQ synthesis protein D (PqqD) 0.63 35.0 3.65e-01 79.8% 56.7%
1x2mA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.63 35.0 4.37e-01 77.7% 94.4%
1x2nA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.62 38.0 4.61e-01 79.8% 96.7%
1g3nC01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.62 44.0 4.09e-01 74.5% 91.7%
1aisB02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.61 45.0 4.53e-01 77.7% 95.7%
1w36B05 3.90.320.10 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › 0.58 47.0 3.32e-01 87.2% 80.4%
8hbfB01 3.90.1520.10 Alpha Beta › Alpha-Beta Complex › H-NOX domain › H-NOX domain 0.53 47.0 3.82e-01 98.9% 61.9%
3eeeA00 3.90.1520.10 Alpha Beta › Alpha-Beta Complex › H-NOX domain › H-NOX domain 0.53 46.0 3.71e-01 97.9% 60.1%
1lfuP00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.53 32.0 3.42e-01 77.7% 68.3%
6melB01 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.51 37.0 3.19e-01 77.7% 55.5%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4940726 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.91 55.0 6.67e-01 71.3% 89.2%
4675105 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.89 60.0 6.35e-01 73.4% 76.5%
3974103 101.1.4.16 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_25 0.87 60.0 6.29e-01 70.2% 82.4%
4632225 101.1.4.27 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › CYNS_N 0.86 59.0 6.22e-01 73.4% 77.6%
5037143 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.86 55.0 5.97e-01 83.0% 76.2%
4335698 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.86 60.0 6.13e-01 73.4% 74.4%
3180596 101.1.4.18 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_31 0.86 59.0 6.18e-01 73.4% 77.6%
5031045 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.85 55.0 6.22e-01 78.7% 84.0%
4455317 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.83 56.0 6.06e-01 74.5% 81.2%
3289357 101.1.4.18 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_31 0.83 60.0 6.06e-01 76.6% 74.7%
4589522 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.80 55.0 5.79e-01 78.7% 77.6%
4947991 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.80 56.0 6.20e-01 81.9% 89.3%
3277922 101.1.4.18 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_31 0.80 55.0 6.08e-01 71.3% 88.0%
4536849 10.12.1.146 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › HTH_3 0.79 51.0 3.30e-01 71.3% 15.1%
5059226 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.79 54.0 5.83e-01 94.7% 81.2%
3288109 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.79 52.0 5.96e-01 72.3% 91.4%
4043777 101.1.4.16 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_25 0.78 58.0 5.98e-01 79.8% 81.1%
4984923 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.77 55.0 5.94e-01 100.0% 87.5%
4032317 101.1.4.16 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_25 0.75 57.0 5.88e-01 80.9% 83.3%
3268699 198.1.1.0 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.65 34.0 3.86e-01 73.4% 67.1%
3230818 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.63 42.0 4.68e-01 71.3% 86.7%
4997274 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.62 55.0 4.48e-01 97.9% 82.3%
5067099 101.1.10.3 ↗ alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.57 39.0 3.55e-01 72.3% 74.8%
5028792 330.7.1.0 ↗ a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain 0.54 39.0 3.46e-01 76.6% 95.9%
3551261 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.53 44.0 3.05e-01 91.5% 62.7%
3486431 304.48.1.0 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.52 37.0 2.59e-01 73.4% 37.8%